Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I17
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0658 - 20366559-20367562,20367745-20367937                       30   2.8  
12_02_0954 - 24757417-24758214                                         29   4.9  
02_05_0040 + 25341418-25341810                                         29   4.9  
03_02_0487 + 8821543-8821866,8821958-8822335,8822928-8823020,882...    28   8.6  

>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -1

Query: 342 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQV 163
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL   V
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVV 310

Query: 162 QGG 154
             G
Sbjct: 311 HPG 313


>12_02_0954 - 24757417-24758214
          Length = 265

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 453 TXERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 322
           T +RPRP+  A  A+  A+       A+G      Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 397 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 299
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>03_02_0487 +
           8821543-8821866,8821958-8822335,8822928-8823020,
           8823613-8824236
          Length = 472

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 396 LPPAQWHHVLELQVAAALXYPSRGPSLRVPSFLVQSGP 509
           LPP+      E +  +A   P+R P +R+P+  V+ GP
Sbjct: 417 LPPSDLKDSKEDKDVSAAVKPARPPPIRIPAVAVRVGP 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,680,618
Number of Sequences: 37544
Number of extensions: 496189
Number of successful extensions: 1362
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)