Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I16
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 281 9e-77
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 159 3e-40
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 155 1e-38
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 128 1e-30
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 84 3e-17
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 81 1e-16
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 73 7e-14
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 54 3e-08
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.12
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ... 28 1.9
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 281 bits (689), Expect = 9e-77
Identities = 134/157 (85%), Positives = 138/157 (87%)
Frame = +2
Query: 236 PAIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 415
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 416 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 595
PEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGD
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157
Query: 596 GVSHTXPIYEGYALPHAHPASWT*PXRDLTDYLMXIL 706
GV+HT PIYEGYALPHA RDLTDYLM IL
Sbjct: 158 GVTHTVPIYEGYALPHA-IMRLDLAGRDLTDYLMKIL 193
Score = 60.9 bits (141), Expect = 2e-10
Identities = 26/35 (74%), Positives = 31/35 (88%)
Frame = +3
Query: 129 KKLPRLVVDNGSGMCKAGFAGDDAPRAVFPSNRGK 233
+++ LV+DNGSGMCKAGFAGDDAPRAVFPS G+
Sbjct: 3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGR 37
Score = 35.9 bits (79), Expect = 0.007
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +1
Query: 754 VRDXKEXLCYVALXFXQEMAXXXSSSS 834
VRD KE LCYVAL F QE+ SSS
Sbjct: 209 VRDIKEKLCYVALDFEQELQTAAQSSS 235
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 159 bits (387), Expect = 3e-40
Identities = 76/156 (48%), Positives = 107/156 (68%), Gaps = 1/156 (0%)
Frame = +2
Query: 251 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEH 427
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 428 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 607
P+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTH 166
Query: 608 TXPIYEGYALPHAHPASWT*PXRDLTDYLMXILTRA 715
+ PIY+G+++P A RD+TDYL L ++
Sbjct: 167 SVPIYDGFSIPSAIQQEEI-GGRDVTDYLQLQLRKS 201
Score = 44.0 bits (99), Expect = 3e-05
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 144 LVVDNGSGMCKAGFAGDDAPRAVFPSNRGK 233
+ +DNGSG KAGFAGDD P+ +FP+ G+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGR 41
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 155 bits (375), Expect = 1e-38
Identities = 71/147 (48%), Positives = 102/147 (69%)
Frame = +2
Query: 272 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 451
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 452 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTXPIYEGY 631
+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H P+YE
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESV 169
Query: 632 ALPHAHPASWT*PXRDLTDYLMXILTR 712
L H RD T YL+ +L R
Sbjct: 170 VLNHL-VGRLDVAGRDATRYLISLLLR 195
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 144 LVVDNGSGMCKAGFAGDDAPRAVFPSNRGK 233
+V+DNG+G K G+A D+ PR FPS G+
Sbjct: 6 IVLDNGTGFVKVGYAKDNFPRFQFPSIVGR 35
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 128 bits (308), Expect = 1e-30
Identities = 61/130 (46%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Frame = +2
Query: 275 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 451
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 452 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 607
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 608 TXPIYEGYAL 637
P+ EGY +
Sbjct: 193 IIPVAEGYVI 202
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 144 LVVDNGSGMCKAGFAGDDAPRAVFPS 221
+++DNG+G K G+AG+DAP VFP+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPT 33
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 83.8 bits (198), Expect = 3e-17
Identities = 40/107 (37%), Positives = 59/107 (55%)
Frame = +2
Query: 317 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 496
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 497 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTXPIYEGYAL 637
E+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 33.1 bits (72), Expect = 0.050
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 144 LVVDNGSGMCKAGFAGDDAPRAVFPSNRGK 233
+V+D GS + GF+G+D P+ V PS G+
Sbjct: 14 IVIDPGSKWTRIGFSGEDIPKCVLPSYCGE 43
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 81.4 bits (192), Expect = 1e-16
Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 4/137 (2%)
Frame = +2
Query: 263 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 439
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 440 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTX 613
TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 614 PIYEG-YALPHAHPASW 661
P+ G L A SW
Sbjct: 181 PVLNGERILSEAKRISW 197
Score = 30.7 bits (66), Expect = 0.27
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 144 LVVDNGSGMCKAGFAGDDAPRAVF 215
LV+DNGS +AG+ G+ P+ VF
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVF 50
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 72.5 bits (170), Expect = 7e-14
Identities = 36/133 (27%), Positives = 70/133 (52%), Gaps = 2/133 (1%)
Frame = +2
Query: 236 PAIRXVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 409
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 410 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 589
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 590 GDGVSHTXPIYEG 628
G + P+ +G
Sbjct: 157 GSDNASVTPVVDG 169
Score = 34.7 bits (76), Expect = 0.017
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 129 KKLPRLVVDNGSGMCKAGFAGDDAPRAVFPSNRG 230
+++P LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 54.0 bits (124), Expect = 3e-08
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +2
Query: 332 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 499
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 500 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTXPIYEG 628
P +A + ++ LYA G G+V+D G + PI +G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 392 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 535
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 108 TNSRRATKKLPRLVVDNGSGMCKAGFAGDDAPRAVFPSN 224
TN R+T +PR+++ NG G+ + + G P +F N
Sbjct: 418 TNRNRST--VPRIIISNGGGIRGSMYQGKFGPDEMFQLN 454
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 434 LLTEAPLNPKANREKMTQIMFETFN 508
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,808
Number of Sequences: 5004
Number of extensions: 60213
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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