Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I15
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   3.2  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    27   4.2  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   5.6  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   7.4  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   9.7  

>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 125 IWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 220
           +W+P PV  SG    T   C+ LP  G  +T V
Sbjct: 23  LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 263 TYWPP*KYWTDIFSHAPSLVT 325
           TY PP  Y  D+FS APS+ +
Sbjct: 257 TYLPPFNYDHDVFSFAPSVAS 277


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 76  SNAIAYYVANESLRGGDLATQARVWQWAS 162
           S + A Y+ NE+LR G +   +R+W  AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 155 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 262
           GH  L  + C  P++GSS  L+  +C   N R+  V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/52 (19%), Positives = 28/52 (53%)
 Frame = +3

Query: 330 ESHLPMSLSSXTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSL 485
           E+ +P+   +  L +  +++ +P+V S  +     +  +  +P V+ ++GS+
Sbjct: 509 EASIPIDELTDALKNYHENLEEPTVESEEVEANDSYYRIDEKPMVTVLLGSM 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,456
Number of Sequences: 5004
Number of extensions: 52980
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)