Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I15
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 57 2e-08
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 54 2e-07
06_01_0611 + 4420873-4422207 30 2.5
11_06_0584 - 25220371-25222917 29 5.8
02_04_0633 - 24616563-24617279 29 5.8
02_03_0179 + 16025962-16026143,16026570-16026684,16026852-160270... 28 7.7
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 56.8 bits (131), Expect = 2e-08
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Frame = +1
Query: 25 GKVPAFESADGKVLLTESNAIAYYVA----NESLRGGDLATQARVWQWASWSDSELLPAS 192
GK+P E+ +G V ESNAIA YVA N SL G L + + QW +S +E+
Sbjct: 76 GKIPVLETPEGAVF--ESNAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFSATEVDANI 133
Query: 193 CAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 318
W++P LG + E A + L +L L+ HL + T+L
Sbjct: 134 GRWLYPRLGFGPYVPVLEEFAITSLKRSLGALNTHLASNTYL 175
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 366 LLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYDPK 521
L + F +L S S +V+R+F T+ +QP V+G + P K
Sbjct: 191 LYYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKVIGDFKQAESVPPVQKK 242
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 53.6 bits (123), Expect = 2e-07
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Frame = +1
Query: 25 GKVPAFESADGKVLLTESNAIAYYVANES-------------LRGGDLATQARVWQWASW 165
GKVP E+ DG V ESNAIA YV + S L G L A + QW +
Sbjct: 613 GKVPILETPDGPVF--ESNAIARYVLSSSHFPEVTRSKSDNPLYGSSLIEYAHIEQWIDF 670
Query: 166 SDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 318
S +E+ + W+FP LG + + E A + L +L L+ HL + T+L
Sbjct: 671 SATEVDANTGKWLFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNTYL 721
Score = 52.4 bits (120), Expect = 4e-07
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Frame = +1
Query: 25 GKVPAFESADGKVLLTESNAIAYYV-------------ANESLRGGDLATQARVWQWASW 165
GK+P E+ DG V ESNAIA YV A+ L G L A + QW +
Sbjct: 52 GKIPVLETPDGPVF--ESNAIARYVLSHCHFPEVTRSKADNPLYGSSLIEYAHIEQWNDF 109
Query: 166 SDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 318
S +E+ W++P LGI + + E A + L +L L+ HL + T+L
Sbjct: 110 SATEVDANIGKWLYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNTYL 160
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 366 LLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYDPK 521
L F ++ S S +V+R+F T+ +QP V+G + + P K
Sbjct: 176 LYMGFARIMTKSFTSEFPHVERYFWTMVNQPNFKKVLGDVKQAESVPPVQKK 227
>06_01_0611 + 4420873-4422207
Length = 444
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +2
Query: 407 FVADKRSAL-----VPDRRPPAASVGRRRLAHALC 496
+V D+ +AL P RRPPA S RRRLA + C
Sbjct: 279 YVMDEHAALRVAVRTPKRRPPARSRSRRRLALSEC 313
>11_06_0584 - 25220371-25222917
Length = 848
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 257 FARSTFCLLNCMIPR*GKTQAQEAGSSSLSD 165
+ +ST C C +PR K +AG S+++D
Sbjct: 408 WTQSTICCCYCRVPRIMKATTADAGGSNIND 438
>02_04_0633 - 24616563-24617279
Length = 238
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 80 MPSLTTLPMKVSAEEIWLPKPVSGSGHHGLTANYC 184
MP+ TT+ M+ S + W P+ G HG+ N+C
Sbjct: 1 MPAATTIQMEASPADHWSPRHRRRCGCHGV--NWC 33
>02_03_0179 +
16025962-16026143,16026570-16026684,16026852-16027065,
16027346-16027397,16027411-16027696
Length = 282
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 504 EEPHRA*ASRRRPTLAAGGRRSGTNAERLSATNGRSGLARAGKHAA 367
++PHR A R+P A+G G A R+S + + R HAA
Sbjct: 32 QQPHRP-APLRQPLAASGHCGGGRGARRVSRSRSSAAHPRGRLHAA 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,602,061
Number of Sequences: 37544
Number of extensions: 440991
Number of successful extensions: 1432
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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