Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I14
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    30   0.45 
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    29   1.0  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    29   1.0  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    29   1.0  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   9.8  

>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1024

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 23/94 (24%), Positives = 38/94 (40%)
 Frame = +1

Query: 412  LSLVTKLQTVLDNIVVAPGEFAACQQLEEVRQVGSYKKGTMMAGKNVADIVVIMKTLPTK 591
            + L   L+ +LDN+ V    FA   QLEE+  V   ++  + A       +       T 
Sbjct: 924  MDLEHSLKVLLDNVTVEKSPFA---QLEELEVVRKKREAEIEASSKTVKRLASNNKFLTD 980

Query: 592  EAVEGLSNKVNEEVNXLMKAEGXGAXVSRVSRAR 693
              VEGL        N L++ +   +   ++  AR
Sbjct: 981  SNVEGLLEAPTSLENSLVEDDKWASLRQKIKAAR 1014


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 147 FTLFCTWNVNDIEVVFSQIFL*LFLRASLYSVRIVLIG 34
           FTL   WN     VVFS+  L  F++ S Y   IV++G
Sbjct: 414 FTLVLMWNWIGDMVVFSKNVLFRFIQLSFYVGMIVILG 451


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +1

Query: 280 PFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVV 459
           P  +L   P  P+    PD + L Q +L+    LC        V  L  + +T+L ++ V
Sbjct: 213 PLTVLTQNPNLPKLLERPDINDLHQGILQELDSLCNCLGSSLDVKKLSKQRETLLSHMQV 272

Query: 460 AP 465
            P
Sbjct: 273 NP 274


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 512 PTCRTSSSCWQAANSPGATTILSNTVCSFVTRL-KTAA*SVG 390
           P+  T+++     ++ G TT  SN+  SF+TRL  TAA S G
Sbjct: 763 PSTPTATTISTTTSASGITTTASNSRDSFITRLPPTAALSTG 804


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +3

Query: 231 DGASTLQQTPSLDASSALRPFISRTRFS*MQTGSRRLRAHSGPSKEAHGAMSVTYRSSSC 410
           DGAST  + PS DA + + P+      +   +GS         + E+H    +  +S  C
Sbjct: 7   DGASTSVK-PSDDAVNTVTPWSILLTNNKPMSGSENTL-----NNESHEMSQILKKSGLC 60

Query: 411 FEPR---HETADSIGQYCCGSRRI 473
           ++PR   H T   +  +    RR+
Sbjct: 61  YDPRMRFHATLSEVDDHPEDPRRV 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,095
Number of Sequences: 5004
Number of extensions: 52609
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)