Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I14
(818 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0674 - 5502275-5502954,5503054-5504746 31 1.1
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 30 1.9
11_01_0673 - 5491694-5493102,5493386-5493995 30 1.9
01_06_0208 - 27540077-27540992,27541310-27541497 30 1.9
06_02_0011 - 10569471-10572245 30 2.5
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700... 29 3.4
06_03_1478 - 30420097-30420651 29 5.9
04_03_0229 - 13006869-13007017,13007925-13008089,13008178-130083... 29 5.9
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285... 28 7.8
>11_01_0674 - 5502275-5502954,5503054-5504746
Length = 790
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -3
Query: 621 NLIGESLDSLFRWQSFHDDYDISNVLPG 538
NL+ ESL ++ WQSF D D+ VLPG
Sbjct: 155 NLVIESLSDVYLWQSFDDATDL--VLPG 180
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 30.3 bits (65), Expect = 1.9
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +3
Query: 234 GASTLQQTPSL-DASSALRPFISRTRFS*MQTGSRRLRAHSGPSKEAHGAMSVTYRSSSC 410
G LQ+TPS D+ S + R S G + L + GP ++G S
Sbjct: 322 GFLPLQKTPSTGDSLSPFSLIVKRASQSLSSRGLKSLCSQQGPGSCSYG---------SA 372
Query: 411 FEPRHETADSIGQYCCGSRRICSLPATR 494
+P + +S C G R CS P T+
Sbjct: 373 ADPTAISGESWSSKCSGLTRTCSRPLTK 400
>11_01_0673 - 5491694-5493102,5493386-5493995
Length = 672
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -3
Query: 621 NLIGESLDSLFRWQSFHDDYDISNVLPG 538
NL+ ESL ++ WQSF DY VLPG
Sbjct: 166 NLVIESLPDVYLWQSF--DYPTELVLPG 191
>01_06_0208 - 27540077-27540992,27541310-27541497
Length = 367
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Frame = +3
Query: 354 GPSKEAHGAMSVTYRSSSCFEPRHETADSIGQYCCGSRRICSLPAT-RRSAASWVLQEGD 530
GPS EA GA R + R A Q CG + P RR SW ++G
Sbjct: 65 GPSAEAAGAWGSVVRLARARRRRAGAACPARQQRCGGFATAARPGNPRRGDVSWDARDGA 124
Query: 531 NDGREER 551
R R
Sbjct: 125 RAARRRR 131
>06_02_0011 - 10569471-10572245
Length = 924
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +1
Query: 304 PAFPRCKPAPDDSVLTQALLKRHTEL--CPSPTDQAAVLSLVTKLQTVLDNIVVAPGEFA 477
PAFP K P SVL L R+ C S + A++++++ L T L +
Sbjct: 227 PAFPPYKHQPATSVLRSNYLDRYKLFVSCNSTSFVASLVTVILLLSTELSKHGIRSKAVI 286
Query: 478 ACQQLEEVRQVGSYKKG 528
C + + VG+Y G
Sbjct: 287 VCVVADLLCLVGAYAAG 303
>10_03_0010 +
7007694-7007888,7007994-7008059,7008161-7008334,
7009232-7009306,7009384-7009510,7012280-7012371,
7012496-7012566,7012683-7012792,7013016-7013053,
7013825-7013960,7014382-7014456,7014574-7014697,
7014917-7015013,7015426-7015451,7016180-7016255,
7016499-7016636,7016735-7016872
Length = 585
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 277 PPFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELC-PSPTDQAAVL 414
PP +L + +FP PA D +L L +RH C P P V+
Sbjct: 17 PPPPFILRQLSFPAAVPALDLDILCCRLSRRHRLACLPQPPSDVLVV 63
>06_03_1478 - 30420097-30420651
Length = 184
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 223 GRGYRVHHDRCRAPFQEKQFILG*R 149
G+ YR DRC+APF+ +Q + G R
Sbjct: 103 GKRYRYVCDRCKAPFETRQALGGHR 127
>04_03_0229 -
13006869-13007017,13007925-13008089,13008178-13008332,
13010276-13011021
Length = 404
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 213 YPRPGRDGASTLQQTPSLDASSAL 284
+PR G DG L QTPS A+ AL
Sbjct: 83 FPRRGEDGVHLLSQTPSSPAAWAL 106
>02_04_0160 -
20427774-20428217,20428301-20428402,20428503-20428595,
20428675-20428860,20428966-20429213,20429292-20429412,
20430674-20430718,20431086-20431138,20431152-20431173
Length = 437
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -1
Query: 464 GATTILSNTVCSFVTRLKTAA*SVGDGHSSVCLFRRA*VSTESSGAGLHLGKAGSANKRS 285
G+ LSNT CS V + SV +S R+ +T + G +G G+ +
Sbjct: 28 GSELHLSNTTCSKVKMVSQVRPSVNQMETSDDATRQVIPNTRNEG---RMGPTGNTGLKR 84
Query: 284 KGGRSIKTRGLL 249
+ GR + G L
Sbjct: 85 RKGRGLTINGTL 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,785,996
Number of Sequences: 37544
Number of extensions: 384985
Number of successful extensions: 961
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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