Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I13
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.27
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c... 29 0.82
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 29 1.1
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 28 1.9
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 3.0
SPCC14G10.03c |ump1||proteasome maturation factor Ump1 |Schizosa... 27 3.3
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 27 4.4
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 26 5.8
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 5.8
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.27
Identities = 21/85 (24%), Positives = 30/85 (35%)
Frame = +2
Query: 164 LPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTSYETG 343
+P+ Q NYQ Q Y+Q D + L P +F+ G S
Sbjct: 29 MPINQGGMNYQQQTYPYQQPYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVADY 88
Query: 344 NNIQAQEQGYLKTVGDNQDNTALVQ 418
Q Q GY + +NT +Q
Sbjct: 89 GQQQQQMYGYNGMMPQTMNNTGFMQ 113
>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 29.1 bits (62), Expect = 0.82
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -3
Query: 508 VTGNSETELVSGVLDGNDLTIRGCVCIGSLLDQSSVVLVITDCLQITLLLSLNVVTSF-- 335
+T SE +L VL G +R +G + ++V ++ CL L LNV + F
Sbjct: 161 ITLPSEVDLGLKVLKGACYAMRAMYILGFIFFALTIVSIVISCLPFFGPLFLNVFSFFAT 220
Query: 334 I*SFVASV 311
I +F+A+V
Sbjct: 221 IFTFIAAV 228
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -3
Query: 220 LSIFLLLGLIVVEVLFKWELVFHLLFWLQRNLPLGKSRRNGNKS 89
L++ +GL+V+ + W + +HL++ L R P+ + R S
Sbjct: 14 LALPFRIGLLVIVGTWLWSVCYHLIYILNRYQPISPNPRGSLNS 57
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 173 EQNFNNYQPQQQEYRQAKPVDDFRPK-VQLETSTYIPIIRFDKEQGTDGSYKTSYETGNN 349
+ F + + Q+++Y P++ RP+ + + YI I + GTD ++ E +
Sbjct: 178 QDEFEDEERQEEKYETGPPIESVRPEALGISDDDYIQIYEVFGD-GTDYAFALEDEDAED 236
Query: 350 IQAQEQGYLKTV 385
+ +E LKT+
Sbjct: 237 -ELEESVSLKTI 247
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.6 bits (51), Expect(2) = 3.0
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -3
Query: 247 RSEVIDWFCLSIFL 206
R +++ WFC+S+FL
Sbjct: 2194 RRKLVVWFCISVFL 2207
Score = 20.6 bits (41), Expect(2) = 3.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -3
Query: 196 LIVVEVLFKWELVFHLLFWLQR 131
LIV + W L+ +L W+ R
Sbjct: 2237 LIVAFYIVLWALLLGVLAWISR 2258
>SPCC14G10.03c |ump1||proteasome maturation factor Ump1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 129
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 131 SLKPEQQVEDQLPLEQNFNNYQPQQQEYR 217
S+ +VE++ PLE N++ QQQ+ R
Sbjct: 25 SIPAVHRVENKHPLESRLKNWEAQQQQIR 53
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 1 LIVHXNPRATRLPHVKPHIRNHEAADRNHR 90
L+ H A R PH+ H RN + +HR
Sbjct: 476 LVFHCEHSAHRAPHLALHFRNTDRRMNSHR 505
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 224 KPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTSYETGNNIQAQEQGYLKT 382
KP+ D +PK + +T T + I R+ Q + K + + QE+ + T
Sbjct: 106 KPMQDEKPKTEADTRT-LKIARYRMRQNLEKELKALSKDSETNEEQERKFWLT 157
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 119 QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQ 256
Q++ + +QQ + Q +Q Q QQQ+ ++ P + F P Q
Sbjct: 257 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQAPQNAFFPNPQ 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,653
Number of Sequences: 5004
Number of extensions: 61095
Number of successful extensions: 239
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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