Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I13
         (843 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11248| Best HMM Match : LMP (HMM E-Value=0.18)                      31   0.89 
SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           30   2.7  
SB_55639| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_59385| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_45707| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)            29   6.2  

>SB_11248| Best HMM Match : LMP (HMM E-Value=0.18)
          Length = 442

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 17/46 (36%), Positives = 30/46 (65%)
 Frame = +3

Query: 156 KTNSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVS 293
           +T  HL++ + TIS + + +D Q++   SD++S    VPTSP++ S
Sbjct: 379 ETIRHLSEQNETISNTYKGMD-QSELEESDVRSQSGSVPTSPVTPS 423


>SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 143 EQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLE 262
           +QQ++ Q   +Q     QPQQQ+ +Q +P      + QL+
Sbjct: 103 QQQLQQQQQQQQQLQQQQPQQQQQQQQQPQQQQPQQQQLQ 142


>SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 128 VSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPII 286
           +SL+P + ++    L  NF +Y   QQ  R + P++      QL TST I ++
Sbjct: 158 ISLQPLKGIKSDKDLVSNFKSY---QQSARSSSPINVATNSKQLTTSTPIKVM 207


>SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 143 EQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLE 262
           +QQ++ Q   +Q     QPQQQ+ +Q +P      + QL+
Sbjct: 102 QQQLQQQQQQQQQLQQQQPQQQQQQQQQPQQQQPQQQQLQ 141


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
 Frame = +3

Query: 156  KTNSHLNKTSTTIS---PSNRNIDKQNQSMTSD-LKSNWRPVPTSPLSVSIRNKEPTEAT 323
            K    + KT   I+   P+ +   +Q QS T++ L +N      +   ++I N  PT+  
Sbjct: 737  KNTQQITKTLININNNNPTQQQKQQQQQSTTTNTLNNNKNTQQITKTLININNNNPTQQQ 796

Query: 324  KLHMKLVTTFRLKSRVI*RQSVITKTTLLWSN 419
            + +  + TT   +       S   K    WSN
Sbjct: 797  QPYSSMQTTILFRQDYYIYYSNCNKIICEWSN 828


>SB_55639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +3

Query: 138 SQNSKWKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRN 302
           S NS W+TN       T++SPS  N    NQS +     N  P   +  + S RN
Sbjct: 513 SPNSSWQTNQSGGLALTSLSPS-LNRPSSNQSPSMSRYGNHSPTKRAREAESKRN 566


>SB_59385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 308 TDGSYK--TSYETGNNIQAQEQGYLKTVGDNQDNTALVQ 418
           TDGS +  TSYE+ + I  Q+        +NQD +AL+Q
Sbjct: 282 TDGSMRENTSYESCHTISGQDAARSAPPNNNQDYSALMQ 320


>SB_45707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 27/102 (26%), Positives = 40/102 (39%)
 Frame = +2

Query: 116 PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPIIRFD 295
           P+ K S KP+ Q  D+        + +PQ Q+ + A+P        +L+           
Sbjct: 25  PKTKTS-KPQDQ--DKQAARPRQASRKPQDQDKQAARPRQASLKTSKLQDQNNQAARPRQ 81

Query: 296 KEQGTDGSYKTSYETGNNIQAQEQGYLKTVGDNQDNTALVQQ 421
             Q    S KTS     N Q       +T   +QDNT  V+Q
Sbjct: 82  ARQARQASLKTSKLQDQNKQDARPASRRTKPQDQDNTRQVRQ 123


>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 119 QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQ 256
           QR  S  P      Q P +  +   QPQQQ+ +Q+   D FRP+ Q
Sbjct: 673 QRGASYPPRMPGMQQTPSQYGYQ--QPQQQQQQQS--FDQFRPQFQ 714


>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +3

Query: 138 SQNSKWKTNSHLNKTSTTISPSNRNIDK--QNQSMTSDLKSNWRPVPTSPLSVSIRNKEP 311
           ++N+K KT  + +KT+     +  N DK  +N++ T + K+  RP+   P + + R   P
Sbjct: 499 TKNNKDKTKENKDKTNENKDKTKENKDKTKENKNKTKENKTANRPLTPLPATTANRLLPP 558


>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
          Length = 446

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 144 NSKWKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNW-RPVPTSPLSV-SIRNKE 308
           + KW  N     ++   + SN NI   N    S+ KS + R  PT P SV S   KE
Sbjct: 241 HDKWSENGEDRNSTGKTNSSNENITVSNSVRMSEGKSVFKRNRPTEPASVPSTETKE 297


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,859,921
Number of Sequences: 59808
Number of extensions: 476862
Number of successful extensions: 2311
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2152
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)