Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I13
(843 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70034-5|CAA93851.2| 197|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z81082-5|CAB03093.2| 429|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z73896-4|CAA98057.2| 503|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 29 3.1
AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical... 29 4.1
AF003385-5|AAB54245.1| 494|Caenorhabditis elegans Hypothetical ... 29 4.1
U80443-6|AAK68201.1| 643|Caenorhabditis elegans Ferm domain (pr... 29 5.5
U80443-5|AAD32269.1| 635|Caenorhabditis elegans Ferm domain (pr... 29 5.5
Z69791-3|CAA93662.1| 924|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z69791-2|CAA93661.2| 919|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z69791-1|CAA93660.1| 945|Caenorhabditis elegans Hypothetical pr... 28 7.2
AL032647-2|CAA21689.1| 178|Caenorhabditis elegans Hypothetical ... 28 7.2
AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical ... 28 7.2
Z70205-3|CAD44095.1| 191|Caenorhabditis elegans Hypothetical pr... 28 9.5
U58751-7|AAB00658.2| 729|Caenorhabditis elegans Hepatocyte grow... 28 9.5
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 28 9.5
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 28 9.5
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 28 9.5
>Z70034-5|CAA93851.2| 197|Caenorhabditis elegans Hypothetical
protein C18E9.5 protein.
Length = 197
Score = 32.3 bits (70), Expect = 0.44
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 286 DNGDVGTGLQLDFRSEVIDWFCLSIFLLLGLIVV 185
D+ D G + + RSE++DW + I ++LGL+ +
Sbjct: 13 DDFDYGDNVSIIDRSEIVDWSAIVIKIILGLVFI 46
>Z81082-5|CAB03093.2| 429|Caenorhabditis elegans Hypothetical
protein F42G4.2 protein.
Length = 429
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 141 QNSKWKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNW 260
+NSK + SH N + + PS+ DK SDL N+
Sbjct: 132 KNSKTSSESHKNDSDGSKEPSDNADDKNKPKFNSDLAKNF 171
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 119 QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETST 271
Q + ++P+QQ P+ N N QQ YR + RP VQ++ T
Sbjct: 23 QMRPVMQPQQQRTMYYPVRTNCQNRCNQQTRYRWNVRPTNIRPNVQVQIRT 73
>Z73896-4|CAA98057.2| 503|Caenorhabditis elegans Hypothetical
protein F09E8.6 protein.
Length = 503
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 180 TSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTE 317
T+TT P RN +K+N+S +S + T+P + + P E
Sbjct: 422 TTTTPKPVPRNKEKENKSASSTTRGTSTATSTTPKTTTTTTSAPKE 467
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +2
Query: 140 PEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPK-VQLETSTYI---PIIRFDKEQG 307
P+QQ + Q + Y+PQQQ+Y Q P D RP+ V+ YI P R +
Sbjct: 73 PQQQFQRQGQSQYIQQQYRPQQQQYSQ-YPRFDLRPQPVRPVRPVYIASTPASRLSYTER 131
Query: 308 TDGSYKTSYETGNNIQAQ 361
SY E N + +
Sbjct: 132 PQTSYGDEIEDTNYLSGR 149
>AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical
protein Y56A3A.32 protein.
Length = 700
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 116 PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLE 262
P++K KPE+ E + P QP+Q E +Q D PK Q++
Sbjct: 133 PEKKEEAKPEKPAEPKEPEPAQKQAEQPEQAEEKQ--ETKDAEPKEQVD 179
>AF003385-5|AAB54245.1| 494|Caenorhabditis elegans Hypothetical
protein R08F11.3 protein.
Length = 494
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 214 IFLLLGLIVVEVLFKWELVFHLLFWLQRNLPLG 116
+F +L L++ + +FHLL+W +RNLP G
Sbjct: 1 MFFILVLVLTGISI---YLFHLLYWKRRNLPPG 30
>U80443-6|AAK68201.1| 643|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 4,
isoform b protein.
Length = 643
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 141 QNSKWKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLK-SNWRPVPTSP 281
QNS T H N S++ SP N N S ++L S R V TSP
Sbjct: 452 QNSLKVTTVHDNTASSSSSPDNSETQNNNLSKITNLNLSIEREVSTSP 499
>U80443-5|AAD32269.1| 635|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 4,
isoform a protein.
Length = 635
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 141 QNSKWKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLK-SNWRPVPTSP 281
QNS T H N S++ SP N N S ++L S R V TSP
Sbjct: 444 QNSLKVTTVHDNTASSSSSPDNSETQNNNLSKITNLNLSIEREVSTSP 491
>Z69791-3|CAA93662.1| 924|Caenorhabditis elegans Hypothetical
protein F39D8.1c protein.
Length = 924
Score = 28.3 bits (60), Expect = 7.2
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Frame = +2
Query: 173 EQNFNNYQPQQQEYRQAKPVD--DFRPKVQLETSTYIPIIR-FDKEQGTDGSYKTSYETG 343
+QN NNYQ Q Q A D++P + Y + FD++QG G Y+ +
Sbjct: 304 DQNQNNYQGQYQGSTLAPSAGEVDYQPFTPSGNTDYNNNAQGFDQQQGQQGQYQQNQNDQ 363
Query: 344 NNIQAQ---EQGYLKTVGD-NQDNTALVQQGSYTYTAPDGQVIT 463
I G T G N N+ VQ TY QV+T
Sbjct: 364 QVIYPSGGVVAGGAVTGGSYNSPNSGYVQAQPQTYPT---QVVT 404
>Z69791-2|CAA93661.2| 919|Caenorhabditis elegans Hypothetical
protein F39D8.1b protein.
Length = 919
Score = 28.3 bits (60), Expect = 7.2
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Frame = +2
Query: 173 EQNFNNYQPQQQEYRQAKPVD--DFRPKVQLETSTYIPIIR-FDKEQGTDGSYKTSYETG 343
+QN NNYQ Q Q A D++P + Y + FD++QG G Y+ +
Sbjct: 299 DQNQNNYQGQYQGSTLAPSAGEVDYQPFTPSGNTDYNNNAQGFDQQQGQQGQYQQNQNDQ 358
Query: 344 NNIQAQ---EQGYLKTVGD-NQDNTALVQQGSYTYTAPDGQVIT 463
I G T G N N+ VQ TY QV+T
Sbjct: 359 QVIYPSGGVVAGGAVTGGSYNSPNSGYVQAQPQTYPT---QVVT 399
>Z69791-1|CAA93660.1| 945|Caenorhabditis elegans Hypothetical
protein F39D8.1a protein.
Length = 945
Score = 28.3 bits (60), Expect = 7.2
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Frame = +2
Query: 173 EQNFNNYQPQQQEYRQAKPVD--DFRPKVQLETSTYIPIIR-FDKEQGTDGSYKTSYETG 343
+QN NNYQ Q Q A D++P + Y + FD++QG G Y+ +
Sbjct: 322 DQNQNNYQGQYQGSTLAPSAGEVDYQPFTPSGNTDYNNNAQGFDQQQGQQGQYQQNQNDQ 381
Query: 344 NNIQAQ---EQGYLKTVGD-NQDNTALVQQGSYTYTAPDGQVIT 463
I G T G N N+ VQ TY QV+T
Sbjct: 382 QVIYPSGGVVAGGAVTGGSYNSPNSGYVQAQPQTYPT---QVVT 422
>AL032647-2|CAA21689.1| 178|Caenorhabditis elegans Hypothetical
protein Y57A10B.2 protein.
Length = 178
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +3
Query: 162 NSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTEATK 326
++H +S T SPS+ + S +S+ K + + ++PLS S + EP+ +T+
Sbjct: 86 STHFVTSSATASPSS------SSSSSSEYKKKVKRLSSNPLSSSTSSSEPSTSTR 134
>AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical
protein K06A5.4 protein.
Length = 877
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 558 DLIYAGIKANQERAAIEASQTPKLPDNKKRKPL 656
DLIY+ + ANQ A Q PK P + +P+
Sbjct: 107 DLIYSCMSANQRSALRPIQQAPKEPIRTRTEPI 139
>Z70205-3|CAD44095.1| 191|Caenorhabditis elegans Hypothetical
protein C11H1.8 protein.
Length = 191
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 138 SQNSKWKTNSHLNKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTS 278
++ S+ K N L KTS+T +PS +Q S + +N + + S
Sbjct: 45 AKRSRKKANGELPKTSSTAAPSLVRSSRQTDSYVNGTNNNSKKLSAS 91
>U58751-7|AAB00658.2| 729|Caenorhabditis elegans Hepatocyte growth
factor-regulatedtk substrate (hrs) family protein 1
protein.
Length = 729
Score = 27.9 bits (59), Expect = 9.5
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 119 QRKVSLKPEQQVEDQLPLEQNFNN--YQPQQQEYRQAKPVDDFRPKVQLETSTYIPIIRF 292
QR+ +L+ QQ + ++ + ++ Y PQQ Y P +P Q +Y +
Sbjct: 524 QREQALQRFQQQQQEMAMRRHQQQAYYNPQQMGYGAPPPSGPQQPPQQ----SYYGYQQG 579
Query: 293 DKEQGTDGSYKTSYETGN-NIQAQEQGYLKTVGDNQDNTALVQQGSYTY 436
+ Q S + Y+ + + Q Q+Q Y + NQ T VQQ Y
Sbjct: 580 PQSQAPPPS--SQYQQSHASTQQQQQQYYQHYQANQTVTQPVQQAQQQY 626
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 180 TSTTIS--PSNRNIDKQNQSMTSD--LKSNWRPVPTSPLSVSIRNKEP 311
+ST IS P + + ++ S+ S L S+ PT PLSV++RN+ P
Sbjct: 467 SSTAISEVPHSLSHHQRTPSVASSIQLSSHMMNNPTHPLSVNVRNQSP 514
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 180 TSTTIS--PSNRNIDKQNQSMTSD--LKSNWRPVPTSPLSVSIRNKEP 311
+ST IS P + + ++ S+ S L S+ PT PLSV++RN+ P
Sbjct: 484 SSTAISEVPHSLSHHQRTPSVASSIQLSSHMMNNPTHPLSVNVRNQSP 531
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 180 TSTTIS--PSNRNIDKQNQSMTSD--LKSNWRPVPTSPLSVSIRNKEP 311
+ST IS P + + ++ S+ S L S+ PT PLSV++RN+ P
Sbjct: 596 SSTAISEVPHSLSHHQRTPSVASSIQLSSHMMNNPTHPLSVNVRNQSP 643
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,822,563
Number of Sequences: 27780
Number of extensions: 356684
Number of successful extensions: 1544
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -