Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I13
         (843 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65540.1 68418.m08247 expressed protein                             33   0.18 
At3g61870.2 68416.m06948 expressed protein hypothetical protein ...    30   1.7  
At3g61870.1 68416.m06949 expressed protein hypothetical protein ...    30   1.7  
At1g33880.1 68414.m04200 avirulence-responsive family protein / ...    29   2.9  
At5g37630.1 68418.m04532 chromosome condensation family protein ...    29   5.1  
At4g39680.1 68417.m05614 SAP domain-containing protein contains ...    28   6.8  
At5g48470.1 68418.m05993 expressed protein                             28   8.9  
At5g16270.1 68418.m01900 Rad21/Rec8-like family protein weak sim...    28   8.9  
At5g07820.1 68418.m00896 expressed protein                             28   8.9  
At1g09050.1 68414.m01009 expressed protein                             28   8.9  

>At5g65540.1 68418.m08247 expressed protein 
          Length = 605

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
 Frame = +2

Query: 119 QRKVSLKPEQQVEDQL--PLEQNFN--NYQPQQQ-EYRQAKPVDDFRPKVQLETSTYIPI 283
           Q++ SL+  QQ++ Q+   ++Q  N  N+Q QQQ E  + +PV   RP + +E    +  
Sbjct: 441 QQQASLRLPQQIQRQMHPQMQQMVNPQNFQQQQQLERMRRRPVTSPRPNMDMEKDRPLVQ 500

Query: 284 IRFD--KEQGTDGSYKTSYETGNNIQAQEQ 367
           ++ +   E   DG+        +  Q Q+Q
Sbjct: 501 VKLENPSEMAVDGNAFNPMNPRHQQQLQQQ 530


>At3g61870.2 68416.m06948 expressed protein hypothetical protein -
           Synechocystis sp. (strain PCC 6803), PIR:S75899
          Length = 254

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 228 QSMTSDLKSNWRPVPTSP-LSVSIRNKEPTEATKLHMKLVTTFR 356
           QS  SDLK   +P P SP  S ++ +  P   T+L ++ +T  R
Sbjct: 119 QSEISDLKKQLKPTPVSPDGSTAVDSSSPPSTTELQIQRLTEER 162


>At3g61870.1 68416.m06949 expressed protein hypothetical protein -
           Synechocystis sp. (strain PCC 6803), PIR:S75899
          Length = 272

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 228 QSMTSDLKSNWRPVPTSP-LSVSIRNKEPTEATKLHMKLVTTFR 356
           QS  SDLK   +P P SP  S ++ +  P   T+L ++ +T  R
Sbjct: 119 QSEISDLKKQLKPTPVSPDGSTAVDSSSPPSTTELQIQRLTEER 162


>At1g33880.1 68414.m04200 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
           Pfam PF04548: AIG1 family;
          Length = 234

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = +2

Query: 293 DKEQGTDGS--YKTSYETGNNIQAQEQGYLKTVGDNQDNT--ALVQQGSYTYTAPDGQVI 460
           DK++GT  S   K     G ++          +G N+  +  A +    Y+ T PDGQ+I
Sbjct: 12  DKKKGTSVSKPVKNIVLVGRSVNGICTTGNNILGQNKFGSEGAFMHCQMYSTTTPDGQMI 71

Query: 461 TVEYTADEFGFRVSGDHI 514
            V  T   F   VS D+I
Sbjct: 72  NVIKTPGMFDLSVSEDYI 89


>At5g37630.1 68418.m04532 chromosome condensation family protein
           contains pfam profile: PF04154 chromosome condensation
           protein 3, C-terminal region
          Length = 1051

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
 Frame = +3

Query: 519 PLPLXSAEIQ---KGLDLIYAGIKANQERAAIEASQ 617
           P+ L +AE     K LDL+YAG++++  RA+ E+S+
Sbjct: 664 PIDLSNAEEDMNFKMLDLLYAGLESDDWRASTESSE 699


>At4g39680.1 68417.m05614 SAP domain-containing protein contains
           Pfam domain PF02037: SAP domain
          Length = 633

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 125 KVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQ 256
           K+ LK + ++ D + LEQN N +Q       ++ P+D   P  Q
Sbjct: 240 KIELK-DNKIADNVKLEQNVNKFQEPSTVVGESHPMDVEEPLEQ 282


>At5g48470.1 68418.m05993 expressed protein
          Length = 397

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 568 TPASRLTRNAPP*KPVKPRSCQTTRRESRSRLQRSI 675
           T  S LT+  PP   V    C+T ++ESR  L R +
Sbjct: 171 TVLSHLTKKCPPHVQVIGLLCRTPKKESRHELLRRV 206


>At5g16270.1 68418.m01900 Rad21/Rec8-like family protein weak
           similarity to cohesion family protein SYN2 [Arabidopsis
           thaliana] GI:12006360; contains Pfam profiles PF04824:
           Conserved region of Rad21 / Rec8 like protein, PF04825:
           N terminus of Rad21 / Rec8 like protein; supporting cDNA
           gi|18157648|gb|AF400129.1|AF400129
          Length = 1031

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 392 NQDNTALVQQGSYTYTAPDGQVITVEYTADEFGFRVSGDHIPTPPP 529
           NQ+  + +Q     Y+ PDGQ+     T ++ G          PPP
Sbjct: 395 NQETDSSLQGDEQAYSRPDGQLNNAHETDEQLGNLTGFTDSDFPPP 440


>At5g07820.1 68418.m00896 expressed protein
          Length = 561

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 165 SHLNKTSTTISPSNRNIDKQNQSMTSDLKSNWRPVPTSPLSVSIRNKE 308
           S    TS ++SP  R + K N  +    + +    P   LS +++NKE
Sbjct: 158 SETKSTSPSVSPVVRTVKKTNLVVNKASRISQNKSPKEDLSKNLKNKE 205


>At1g09050.1 68414.m01009 expressed protein
          Length = 916

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 46  KPHIRNHEAADRNHRS--YCRCGGSSPKEGFVEARTASGRPTPT*TKLQQL 192
           KP  R HE++ +  RS   C   GS+  E   E R++  + +PT   L Q+
Sbjct: 819 KPEPRKHESSTKKKRSAKACNRNGSADLEHRGEDRSSFTKKSPTSKPLDQI 869


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,080,303
Number of Sequences: 28952
Number of extensions: 336150
Number of successful extensions: 1151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)