Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I09
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 104 2e-23
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 95 1e-20
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 65 1e-11
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 63 4e-11
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 61 2e-10
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 59 9e-10
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 58 1e-09
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 58 2e-09
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 58 2e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 56 8e-09
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 54 2e-08
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 52 1e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 52 1e-07
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 51 2e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 50 3e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 50 4e-07
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 50 5e-07
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 50 5e-07
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 49 9e-07
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 48 2e-06
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 48 2e-06
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 45 1e-05
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 45 2e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 44 2e-05
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 44 3e-05
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 44 3e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 44 4e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 43 6e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 42 8e-05
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 42 1e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 41 2e-04
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 41 2e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 41 2e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 38 0.001
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.002
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 36 0.005
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 36 0.007
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 34 0.022
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 34 0.022
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 31 0.15
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.15
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 30 0.35
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 30 0.35
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 27 2.5
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 2.5
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 2.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 7.5
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 10.0
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 104 bits (249), Expect = 2e-23
Identities = 48/81 (59%), Positives = 59/81 (72%)
Frame = +1
Query: 184 VFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 363
V+VGNIPYE E++ DIF + GPV SF+LV D E+G+PKGYGFCEY D TA SA+RNL
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 364 NGYEIGGRSLRVDNACTEKSR 426
N Y+ G R LRVD ++ R
Sbjct: 67 NNYDAGTRRLRVDFPTADQIR 87
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +1
Query: 499 APEAISKAVATLPPEQMFELMKQMKLXIQNNPNEARNMLLQNPQLAYALLQAQVIMRIVD 678
A + + + +A L P ++ ++ +K P +A + NPQL+YA+ QA ++ R
Sbjct: 155 ANDEVYRVLAQLAPNEIDYMLSAIKALCLEAPEQAAQLFETNPQLSYAVFQAMLMKRYTS 214
Query: 679 PXPAVTXLHP 708
L P
Sbjct: 215 ESVVADLLIP 224
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 95.1 bits (226), Expect = 1e-20
Identities = 41/73 (56%), Positives = 55/73 (75%)
Frame = +1
Query: 184 VFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 363
VFVGNIPY+ + +++ +IF++VGPV +FKLV D ETG KGYGFCE+ D ET A+R L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 364 NGYEIGGRSLRVD 402
N E+G R +RV+
Sbjct: 69 NNSELGPRKIRVE 81
Score = 49.2 bits (112), Expect = 7e-07
Identities = 23/87 (26%), Positives = 44/87 (50%)
Frame = +1
Query: 418 KSRMEMQALMQGPQVENPYGDPVEPEKAPEAISKAVATLPPEQMFELMKQMKLXIQNNPN 597
KS G + NP P+ P ++ + ++T +++ ++ +++ + P
Sbjct: 192 KSSQNKGDYTSGTSISNPTSIPLAP-----SVVQVLSTFSAQELLNMLSKLQTVVHIAPE 246
Query: 598 EARNMLLQNPQLAYALLQAQVIMRIVD 678
EAR +L+ NP L YA QA ++M +VD
Sbjct: 247 EARRLLIANPALPYAAFQAMLLMNLVD 273
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 65.3 bits (152), Expect = 1e-11
Identities = 25/75 (33%), Positives = 50/75 (66%)
Frame = +1
Query: 184 VFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 363
++VGN+P+ + L D+F+++G V+ ++ ++ TG+ KG+G +++++ A S++ L
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFENENDAASSIEKL 340
Query: 364 NGYEIGGRSLRVDNA 408
NGY GGR L++ A
Sbjct: 341 NGYRYGGRPLQLSYA 355
Score = 44.0 bits (99), Expect = 3e-05
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +1
Query: 178 RSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 357
R V+VGN+ Y+ +LK+ +VG VL+ + + + G KG EY E A +A++
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCE-ILNLPNGLSKGCAIIEYSTAEEARTAIK 124
Query: 358 NLNGYEIGGR 387
L+ + GR
Sbjct: 125 TLSNQKFMGR 134
Score = 39.5 bits (88), Expect = 6e-04
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +1
Query: 199 IPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYEI 378
+PY + LKD+F + G V+ + ++E G+ +G G + A+ A++ L+ +
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQMLHNTDF 248
Query: 379 GGRSLRV 399
GR+L V
Sbjct: 249 MGRTLEV 255
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 63.3 bits (147), Expect = 4e-11
Identities = 26/79 (32%), Positives = 49/79 (62%)
Frame = +1
Query: 184 VFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 363
+++GN+ ++ + + +FSE G + LV D+ETGK KG+ F +Y+DQ + + A+ N+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 364 NGYEIGGRSLRVDNACTEK 420
++ R +RVD+ + K
Sbjct: 93 TNVKLLDRLVRVDHVASYK 111
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 60.9 bits (141), Expect = 2e-10
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Frame = +1
Query: 115 TIIKMDKSKEKEEQSIM--DKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRE 288
T+++ + E+ +++ D + +FVGN+ + E L FSE ++ K+V DRE
Sbjct: 7 TVVRKAGGQVWEDPTLLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE 66
Query: 289 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVEN 468
GK +G+GF +KD + L A R NG IG R +++ A ++ E+ ++ N
Sbjct: 67 -GKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRN 125
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 58.8 bits (136), Expect = 9e-10
Identities = 33/102 (32%), Positives = 60/102 (58%)
Frame = +1
Query: 118 IIKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGK 297
II ++ +EEQ +K+ + +FVG +P + T E+ ++ F++ G VL L+ D++TG+
Sbjct: 231 IIDPKRAIPREEQ---EKTAK-MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGR 286
Query: 298 PKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 423
P+G+GF Y + E+A+ A + I G+ + V A + S
Sbjct: 287 PRGFGFVTY-ENESAVEATMSQPYITIHGKPVEVKRATPKAS 327
Score = 48.8 bits (111), Expect = 9e-07
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +1
Query: 148 EEQSIMDKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYK 327
EE S ++ +F+G + +E T + L+D F + G VL ++ D TG+ +G+GF +K
Sbjct: 153 EETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
Query: 328 DQETALSAM 354
+ + M
Sbjct: 213 NPKCVNEVM 221
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 58.4 bits (135), Expect = 1e-09
Identities = 34/104 (32%), Positives = 54/104 (51%)
Frame = +1
Query: 136 SKEKEEQSIMDKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 315
SK QS + +FVGN+ +E T LK+ F +VG + +L+ +TGK KG+GF
Sbjct: 214 SKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGF 273
Query: 316 CEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALM 447
++ D +T + AM E+G S R++ RM ++ M
Sbjct: 274 VDFPDIDTCMKAM------ELGHNSWRLEYGEDRSKRMRNKSPM 311
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 124 KMDKSKEKEEQSIMDKSMRSVFVGNIPYEATGEKLKDIF 240
K + +E E Q +S ++VGN+ + T E L D F
Sbjct: 87 KYGRKEEGESQEESKRSPWGIWVGNLSFHTTKEILTDFF 125
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 58.0 bits (134), Expect = 2e-09
Identities = 31/88 (35%), Positives = 51/88 (57%)
Frame = +1
Query: 172 SMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSA 351
S ++FV N+ ++ + L + FS+VGP+ +V + ETG+ +GYGF + E A A
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Query: 352 MRNLNGYEIGGRSLRVDNACTEKSRMEM 435
+ L ++ GR LR+D A T + R E+
Sbjct: 63 AKELKNKKLHGRILRLDFA-TPRKRSEV 89
Score = 44.0 bits (99), Expect = 3e-05
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Frame = +1
Query: 121 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATG-EKLKDIFSEVGPVLSFKLVFDRETGK 297
+ D++K ++ D R + + N+P+ + L+ FS+ G V K+ + G+
Sbjct: 89 VDTDQNKAVKKTIRQDNRPRLI-IRNLPWSIKKPQHLEPHFSKFGKVREIKIP-TKGGGR 146
Query: 298 PKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTE 417
G+ F KD++ A AM +LNG EI GR + VD A ++
Sbjct: 147 MCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +1
Query: 181 SVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYK 327
+VFV N+ +E T ++L + F + GP+ KLV D T + G GF +++
Sbjct: 278 TVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
Score = 32.3 bits (70), Expect = 0.087
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 292 GKPKGYGFCEYKDQETALSAMRNLNGYEI 378
G+ KG+GF ++ + AL A+R LNG EI
Sbjct: 536 GRSKGFGFMQFISHKYALMALRWLNGREI 564
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 57.6 bits (133), Expect = 2e-09
Identities = 29/102 (28%), Positives = 52/102 (50%)
Frame = +1
Query: 127 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKG 306
+ + + + + + + +V++ N+ E T ++ D+F + G + S LV D + KP+G
Sbjct: 244 VSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRG 302
Query: 307 YGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 432
+GF Y + E A A+ LN E G+ L V A + R E
Sbjct: 303 FGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREE 344
Score = 51.6 bits (118), Expect = 1e-07
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = +1
Query: 145 KEEQSIMDKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY 324
+ + S+ +VF+ N+ + L D FS G +LS K+ D E G KGYGF +
Sbjct: 157 QRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHF 215
Query: 325 KDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRM-EMQAL 444
E+A +A+ ++NG + + + V + + + R +++AL
Sbjct: 216 DSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEAL 256
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +1
Query: 181 SVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 360
S++VG + T L ++F+ +GPV S ++ D T + GY + + + E A+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 361 LNGYEIGGRSLRV 399
LN I GR R+
Sbjct: 141 LNYTLIKGRPCRI 153
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 55.6 bits (128), Expect = 8e-09
Identities = 26/74 (35%), Positives = 44/74 (59%)
Frame = +1
Query: 181 SVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 360
+VFVGN+ + AT + L F G + S +L D ++G+ KG+G+ + D ++A +
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-E 425
Query: 361 LNGYEIGGRSLRVD 402
+NG+ I GR R+D
Sbjct: 426 MNGHFIAGRPCRLD 439
Score = 50.8 bits (116), Expect = 2e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Frame = +1
Query: 181 SVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 360
+VFVG + + + L F E G ++ +++ D ++G+ KGYG+ +++ E A +A+
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323
Query: 361 LNGYEIGGRSLRVD 402
EI GR + +D
Sbjct: 324 NGTKEIDGRMVNLD 337
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 54.0 bits (124), Expect = 2e-08
Identities = 25/97 (25%), Positives = 50/97 (51%)
Frame = +1
Query: 121 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKP 300
+ +S + + ++D S +++ N+P +++ ++ G +LSF+L+ + G
Sbjct: 292 VSQKRSDDYAKNDVLD-SKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSS 350
Query: 301 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNAC 411
KG+ FCE+K+ A A+ L+G + G L AC
Sbjct: 351 KGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFAC 387
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 52.0 bits (119), Expect = 1e-07
Identities = 26/74 (35%), Positives = 43/74 (58%)
Frame = +1
Query: 178 RSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 357
+SV+VGN+ Y T E+L+ F+ G V ++ D+ TG PKG+ + E+ + +A+
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL 114
Query: 358 NLNGYEIGGRSLRV 399
LNG + R L+V
Sbjct: 115 -LNGSMLHERPLKV 127
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 51.6 bits (118), Expect = 1e-07
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Frame = +1
Query: 124 KMDKSKEKEEQSIM---DKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETG 294
K +S+ +E S + ++ R+VFV + T +L D F + GPV ++V D+ +G
Sbjct: 219 KRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISG 278
Query: 295 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQA--LMQGPQVEN 468
+ KG + E+ +++ +A+ L+G + G + V EK+R +A L + E
Sbjct: 279 RSKGVAYVEFCHEDSVQAAIA-LSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEI 337
Query: 469 PY 474
P+
Sbjct: 338 PF 339
Score = 50.4 bits (115), Expect = 3e-07
Identities = 23/70 (32%), Positives = 42/70 (60%)
Frame = +1
Query: 190 VGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNG 369
V NI + T E +K IF G + L D + + KG+G+ +Y++ +A +A+ +NG
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNG 402
Query: 370 YEIGGRSLRV 399
+++ GR++RV
Sbjct: 403 FDLAGRNMRV 412
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 50.8 bits (116), Expect = 2e-07
Identities = 34/105 (32%), Positives = 54/105 (51%)
Frame = +1
Query: 190 VGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNG 369
VGN+ ++ T L D F E V S +LV D T + +G+G+ E++ +T LSA L+G
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADT-LSAALALSG 154
Query: 370 YEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVEPEKAP 504
++ GR +R+ A +S + G V P EP ++P
Sbjct: 155 EDLMGRPVRITVAEPRRS-FAREERSTGDWVRRGPLPPAEPAESP 198
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 50.4 bits (115), Expect = 3e-07
Identities = 28/94 (29%), Positives = 45/94 (47%)
Frame = +1
Query: 127 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKG 306
+DK + + + +FV I ++L+ IFS+ G V +++ + T +G
Sbjct: 84 LDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRG 143
Query: 307 YGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 408
+GF + E A SA+ NLN E GR L V A
Sbjct: 144 FGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 50.0 bits (114), Expect = 4e-07
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +1
Query: 190 VGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNG 369
V N+ + E+L+D+F G + L D+ETG+ KG+ F Y D++ A+ A L+G
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
Query: 370 YEIGGRSLRVD 402
Y LR +
Sbjct: 266 YGWNNLILRCE 276
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 49.6 bits (113), Expect = 5e-07
Identities = 23/86 (26%), Positives = 46/86 (53%)
Frame = +1
Query: 139 KEKEEQSIMDKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFC 318
K+ E + K ++VG +P+ ++++ FS+ GPVL ++ +R+TG K Y F
Sbjct: 92 KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151
Query: 319 EYKDQETALSAMRNLNGYEIGGRSLR 396
E++ + A ++ Y + G+ L+
Sbjct: 152 EFESLDVANVVAETMHNYLLYGKLLQ 177
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 49.6 bits (113), Expect = 5e-07
Identities = 29/78 (37%), Positives = 40/78 (51%)
Frame = +1
Query: 184 VFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 363
+ V + EAT E+++D+F++ GPV + L DR TG KGY EY E A A+
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 364 NGYEIGGRSLRVDNACTE 417
N + L VD A E
Sbjct: 72 N-LSLLDEKLEVDFAFLE 88
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 48.8 bits (111), Expect = 9e-07
Identities = 21/80 (26%), Positives = 45/80 (56%)
Frame = +1
Query: 181 SVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 360
++++GN+ + T L ++ + GPV++ + DR G+GFCE+ ++ A +
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71
Query: 361 LNGYEIGGRSLRVDNACTEK 420
LN ++ G+ +RV+ A ++
Sbjct: 72 LNQVKLFGKPIRVNRASQDR 91
Score = 45.2 bits (102), Expect = 1e-05
Identities = 26/84 (30%), Positives = 41/84 (48%)
Frame = +1
Query: 181 SVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 360
++FVGN+ L D FS +G ++ V E G+ KGYGF Y ETA +A+
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159
Query: 361 LNGYEIGGRSLRVDNACTEKSRME 432
+N + + + V A + + E
Sbjct: 160 MNNQFLMNKPITVSYAFKREGKGE 183
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 48.0 bits (109), Expect = 2e-06
Identities = 23/78 (29%), Positives = 42/78 (53%)
Frame = +1
Query: 169 KSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALS 348
K V+VGN+ + T E++ +FS+ G + + DR T P G+ F EY + + AL
Sbjct: 29 KQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALD 88
Query: 349 AMRNLNGYEIGGRSLRVD 402
+++ ++ + R +R D
Sbjct: 89 SLKYISRTSLDERIIRAD 106
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 47.6 bits (108), Expect = 2e-06
Identities = 24/74 (32%), Positives = 38/74 (51%)
Frame = +1
Query: 181 SVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 360
++ V NIP+ + L D F ++G + + + G +G F + E A ++
Sbjct: 203 AIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQT 262
Query: 361 LNGYEIGGRSLRVD 402
LNGYEI GR LRV+
Sbjct: 263 LNGYEINGRRLRVE 276
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 45.2 bits (102), Expect = 1e-05
Identities = 28/83 (33%), Positives = 40/83 (48%)
Frame = +1
Query: 184 VFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 363
+FVG IP +AT E + D F G +L KL+ G+GF E +D A + +
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVNDF 57
Query: 364 NGYEIGGRSLRVDNACTEKSRME 432
G E G + V+ A E+ R E
Sbjct: 58 QGKEFMGSRIVVEPARGERRRRE 80
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 44.8 bits (101), Expect = 2e-05
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = +1
Query: 157 SIMDKSMRSV-FVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQ 333
S +++ + S+ F+ N+ ++ T E++ D+F GPV +L T + +G F Y++
Sbjct: 4 STVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYENV 60
Query: 334 ETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQAL 444
+ A A L+GY R L V E+++++ Q L
Sbjct: 61 QDARRACEKLSGYNFMDRYLVVHYYNPERAKVDGQDL 97
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 44.4 bits (100), Expect = 2e-05
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +1
Query: 178 RSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 357
R VFVGN+ +EA E L F + G + ++V D +T KG+ + ++KD A+
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 358 NLNGYEI-GGRSLRVDNACTEKSR 426
LN ++ GR+LR+ A + K +
Sbjct: 330 -LNEKKMPEGRTLRIMRAKSTKPK 352
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 44.0 bits (99), Expect = 3e-05
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +1
Query: 223 KLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 399
+L+D+FS G +LS L +G KGYGF ++ E A+ A LNG +G + + V
Sbjct: 399 QLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFV 457
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 44.0 bits (99), Expect = 3e-05
Identities = 22/74 (29%), Positives = 38/74 (51%)
Frame = +1
Query: 181 SVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 360
++ + NIP+ E L +F+ + + + + G +G F + E A + ++
Sbjct: 233 AIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQV 292
Query: 361 LNGYEIGGRSLRVD 402
LNGYEI GR LRV+
Sbjct: 293 LNGYEITGRRLRVE 306
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 43.6 bits (98), Expect = 4e-05
Identities = 21/67 (31%), Positives = 38/67 (56%)
Frame = +1
Query: 139 KEKEEQSIMDKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFC 318
K K ++ + +FVGN+P +++ E L+ F G V S ++ D+ +G+ KGY F
Sbjct: 79 KSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFV 138
Query: 319 EYKDQET 339
E+ + +T
Sbjct: 139 EFINPKT 145
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 42.7 bits (96), Expect = 6e-05
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +1
Query: 181 SVFVGNIPYEATGEKLKDIFSEVGP-VLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 357
S+FVG++ L F + P S K++ D TG + YGF + ++ A+
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 358 NLNGYEIGGRSLRVDNACTEKSRMEMQA 441
++ GY GR LR+ + + KSR + A
Sbjct: 243 HMQGYLCQGRPLRI-SVASPKSRASIAA 269
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 42.3 bits (95), Expect = 8e-05
Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Frame = +1
Query: 121 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKP 300
++ S++ + I +++V N+ + E+ + +F + LS + + +P
Sbjct: 600 VEATTSEKVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRP 659
Query: 301 -----KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 399
G+GF E+KD+ +A++AM +NG+ + G L +
Sbjct: 660 GKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEI 697
Score = 39.9 bits (89), Expect = 4e-04
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = +1
Query: 127 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKL--VFDRETGKP 300
+D + E +Q + + N+P+EAT + ++ + G + S ++ FDR
Sbjct: 704 VDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSA--- 760
Query: 301 KGYGFCEYKDQETALSAMRNLNGYEIGGRSL 393
+G+ F E+ A +AMR L + GR L
Sbjct: 761 RGFAFAEFVTAREAANAMRALKNTHLLGRHL 791
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 178 RSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL---S 348
R+V++ +P + E L + G V S K + D ET KGYGF ++++++AL S
Sbjct: 296 RNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICIS 355
Query: 349 AMRNLNGYE 375
AM L GY+
Sbjct: 356 AM-TLCGYQ 363
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Frame = +1
Query: 118 IIKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDR---- 285
+I ++K EK ++S K S++VGN+P L ++F G F ++ +
Sbjct: 1 MIALEKLSEKNKRSTK-KCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKS 59
Query: 286 -ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 402
++ P + F ++++ +A +A+ +LNG G +L+V+
Sbjct: 60 TDSKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
Score = 41.1 bits (92), Expect = 2e-04
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +1
Query: 181 SVFVGNIPYEATG--EKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAM 354
++FV N+ G ++L+++FS+ G + S L T KGYGF + A+ A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 355 RNLNGYEIGGRSLRVDNACTEKSR 426
LNG G + L V+ A + R
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDR 503
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +1
Query: 163 MDKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETA 342
M++ +V VGN+ T L + F G ++S L +E + Y F E+ + E A
Sbjct: 1 MERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVAL-HRKEKAVDRSYAFVEFDEPEDA 59
Query: 343 LSAMRNLNGYEIGGRSLRVDNA 408
AM N+N + R +RV A
Sbjct: 60 KEAMENMNYSILCDRCIRVSPA 81
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/84 (21%), Positives = 42/84 (50%)
Frame = +1
Query: 151 EQSIMDKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 330
++ ++ +++F+ + Y+ ++ F+ GP+ ++V ++ TGK GY F ++
Sbjct: 91 DRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFER 150
Query: 331 QETALSAMRNLNGYEIGGRSLRVD 402
+ A + G + GR + VD
Sbjct: 151 ERDLKVAYKASAGLMLNGRRIVVD 174
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +1
Query: 184 VFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 363
+FV + E L+ IFS G ++S +++ D+ETG Y F E+ ++E+ A +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 364 NGYEIGGRSLRVD 402
I + VD
Sbjct: 306 QNVLIDDSRIHVD 318
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = +1
Query: 166 DKSMRSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 345
++ +R++ V N+ T E + +IF G + + +++ KGY + EY + A
Sbjct: 95 EEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAA 154
Query: 346 SAMRNLNGYEIGGRSLRV 399
+A+ +N E+ G L V
Sbjct: 155 NAVDKMNNAELDGEELFV 172
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 36.3 bits (80), Expect = 0.005
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Frame = +1
Query: 157 SIMDKSMRSVFVGNIPYEATGEKL----KDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY 324
S+ K + +FV ++ + E+L KD F + GP+L K++ D + Y F ++
Sbjct: 72 SVRGKPVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKD---WLQRPYSFVQF 128
Query: 325 KDQETALSAMRNLNGYEIGGRSLRVDNACTEK----SRMEMQALMQGPQVEN---PYGDP 483
++ + A A+ + GR +R++ A + S Q + ++N PYG+
Sbjct: 129 QNTDDASKALSEAQNTILDGRHIRIERAKVNRTIRISSAPHQPYITKKDIDNLLEPYGEV 188
Query: 484 VEPEKAPE 507
+ + P+
Sbjct: 189 EDVTEIPD 196
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 35.9 bits (79), Expect = 0.007
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = +1
Query: 184 VFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDR-ETGK---PKGYGFCEYKDQETALSA 351
VFVG + +++ +F VG V + F R G P G F + +QE A
Sbjct: 46 VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKA 105
Query: 352 MRNLNGYEIGGRSLRVDNA 408
+ LNG + R + V A
Sbjct: 106 IETLNGKTLDDREIVVQKA 124
Score = 33.1 bits (72), Expect = 0.050
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 13/125 (10%)
Frame = +1
Query: 181 SVFVGNIPYEATGEKLKDIFSEVGPV------------LSFKLVFDRETGKPKGYGFCEY 324
S++V + T E LK++F P + ++ E + +G+GF +
Sbjct: 206 SIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSF 265
Query: 325 KDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVE-PEKA 501
+ E A+ +NG ++G +L V +A + + Q + E +P+E E A
Sbjct: 266 ANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDK-------QNDENEKNENEPIEASESA 318
Query: 502 PEAIS 516
P +S
Sbjct: 319 PTNVS 323
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 34.3 bits (75), Expect = 0.022
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +1
Query: 178 RSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 357
R +F+GNIP E + I G + S++ V D + +GF E++ E A+
Sbjct: 139 RMLFIGNIPKELDDFWMDKILRLSGKLASWRRVADADNSM-TSFGFAEFESNEQFSRALE 197
Query: 358 NLNGYEI 378
LN + +
Sbjct: 198 ALNDFVV 204
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.3 bits (75), Expect = 0.022
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +1
Query: 181 SVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 360
++++G + T ++ +++ +G + KL+ +R TG GY F E+ A SAM +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 361 LNGYEIGG 384
+N I G
Sbjct: 153 MNNKPIPG 160
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 31.5 bits (68), Expect = 0.15
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 181 SVFVGNIPYEATGEKLKDIFS-EVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 357
+++VGN+P + E+LK +FS +VG +K + R G F E+++ A+ A++
Sbjct: 427 TIYVGNLPPSTSEEELKVLFSTQVG----YKRLCFRTKGNGP-MCFVEFENIPYAMEALK 481
Query: 358 NLNG 369
NL G
Sbjct: 482 NLQG 485
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 31.5 bits (68), Expect = 0.15
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 178 RSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDR 285
R+VF+GN+P T +++++ GP+ K+V +R
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +1
Query: 529 TLPPEQMFELMKQMKLXIQNNPNEARNMLLQNPQLAYALLQAQVIM 666
+LP +++ L+ +M L + NPN+++ +L+ P L +L IM
Sbjct: 309 SLPEDEICHLLTRMMLTAKPNPNDSKTLLVYVPPLRADILHQCDIM 354
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 30.3 bits (65), Expect = 0.35
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +1
Query: 181 SVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 360
SVFV NIP E + LK S GPV + E + KG + ++ + E A+ N
Sbjct: 316 SVFVKNIPPETSDVSLKSAMSIFGPVKAI------EFARRKGTAYVDFVNHECVQLAL-N 368
Query: 361 LNGYEIGGRSLRVD 402
+I +L ++
Sbjct: 369 KKTLQINNATLNIE 382
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 493 EKAPEAISKAVATLPPEQMFELMKQMKLXIQNNPNEARNMLLQNPQLAYALLQAQVIM 666
+ +P A+ + V+TLP + K+M+ + N+P + ++ +N Q A+L A M
Sbjct: 533 KSSPVAVQR-VSTLPQASANKQAKEMESKMSNSPTQ-KSKTEENNQAVRAILDASATM 588
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.5 bits (58), Expect = 2.5
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Frame = +1
Query: 115 TIIKMDKSKEKEEQSIMDKSM-----RSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVF 279
T+ K ++ E + S KS +S+ V N+ +L+ +F G + +++V
Sbjct: 848 TLAKSFETTESNKMSTPKKSFEQIKSKSLGVTNVDGTVNEARLRSLFESYGKL--YRVVL 905
Query: 280 DRETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 399
E +G E+ D A A L G+EIGGR L +
Sbjct: 906 HPEH---EG-AVVEFLDIHDAGKASLALEGHEIGGRLLHI 941
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/63 (22%), Positives = 31/63 (49%)
Frame = +1
Query: 178 RSVFVGNIPYEATGEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 357
R+VF+GN+P +++++ F + G + K++ K F + + A+ +R
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL------SKKNIAFVHFLNIRDAIKVVR 352
Query: 358 NLN 366
L+
Sbjct: 353 TLS 355
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = +3
Query: 747 PXPTIXLXXPXXPXPPXXXNXPGPPP 824
P P + P P PP GPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 556 LMKQMKLXIQNNPNEARNMLLQNPQLAYALLQA 654
L+K + I +N +++ ++L P LAY LLQA
Sbjct: 641 LVKLFDIAIPSNLSQSLSVLNFGPGLAYRLLQA 673
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,481
Number of Sequences: 5004
Number of extensions: 60580
Number of successful extensions: 259
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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