Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I08
         (812 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       29   0.044
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    29   0.044
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   2.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.8  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   8.8  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   8.8  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 0.044
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 564 YACNNTGTFQSHMLSHCQVLGCS-QECQHICSTAENQEFHLNR 439
           Y C N     SHM SH  V   S ++C +      + + HL R
Sbjct: 266 YTCVNKSMLNSHMKSHSNVYRYSCRDCSYATKYCHSLKIHLRR 308


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 29.1 bits (62), Expect = 0.044
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 564 YACNNTGTFQSHMLSHCQVLGCS-QECQHICSTAENQEFHLNR 439
           Y C N     SHM SH  V   S ++C +      + + HL R
Sbjct: 24  YTCVNKSMLNSHMKSHSNVYRYSCRDCSYATKYCHSLKIHLRR 66


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 547 RYFPEPHALALPGLGLQSGVSTHLQYCRESRVPSES*SLGTSTVKTA 407
           +Y   P+A   PG GLQ  +  + Q   +   P+   S  T T  +A
Sbjct: 51  QYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLAPTHLQSPNTQTHPSA 97


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 711 PGQELRLFRKQEAGGRAGLSS 649
           P Q+L L +KQ  GG A L S
Sbjct: 536 PWQQLHLNKKQILGGEACLWS 556


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +3

Query: 366 VEEHAQSPYRVQGQAVLTVDVPK 434
           + EH ++PY  +G+ ++   + K
Sbjct: 103 LNEHKKNPYPTKGEKIMLAIITK 125


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = +3

Query: 516 SARACGSGKYLCCYKRKQSNKVNSYQSEYFNEVEDERPML 635
           ++R    G +  CY R  +      +S +    +D+ PM+
Sbjct: 144 TSRTSACGLFSVCYPRVSAQMKADLRSHFRALCQDDTPMV 183


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,311
Number of Sequences: 336
Number of extensions: 4476
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)