Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I08
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 31 0.19
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.8
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 28 1.8
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 27 2.4
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|... 27 3.2
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 27 4.2
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 26 5.5
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 26 5.5
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 26 5.5
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 26 7.3
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 497 LQPKTWQCESMWLWKVPVLLQA*AEQQSKFISVRILQRSGRRASHA 634
L+ T++ + W+ P +L QQSK I V+ + R+ASHA
Sbjct: 815 LRNTTFEAAGSYGWRSPEILSGSLSQQSKEIQVKTREGRIRQASHA 860
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 558 KRKQSNKVNSYQSEYFNEVEDERPMLLPGQQNLARPFPPPPAS 686
K K+ K ++ E EDE P P + RP PP+S
Sbjct: 736 KEKEKKKDREHRKHRETEEEDEGPPPQPARPESTRPALAPPSS 778
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +3
Query: 441 DSDGTLDSLQYCKCVDTPDCNPRPG-SARACGSGKYLCCYKRKQSNKVNSYQSEYFNEVE 617
D D LD + + P+C P PG RAC K C R+ +S S V+
Sbjct: 166 DEDELLDESAHDNVLKVPECKPEPGKKKRAC---KNCTCGLREMEEHESSKTSAQLEAVK 222
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Frame = +1
Query: 715 PLIKSVYSDHLIH---HXASWSDPKP 783
PL S LIH H A WSDPKP
Sbjct: 475 PLYTKASSFKLIHKLTHVAMWSDPKP 500
>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 420 QSKQLDPELCMETVRALPLLLDTFPLPW 337
Q+ LDPELC + L LD +PW
Sbjct: 281 QNWTLDPELCAQIDDILQKFLDDNKIPW 308
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 540 FQSHMLSHCQVLGCSQECQHICSTAENQEFHLNRSL*VH 424
F +L HC ++ S++ + A+N +F LN +L +H
Sbjct: 98 FNRLLLEHCILIKESKKDTWLLEVADNGKFTLNSNLLIH 136
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 158 VERNSGSPXEQ--SSASLRIDTKVKFIDSRGDDVRSHRESKVQADEIPFREPEETE 319
V NS S E SSA R I + + SH++ K+Q + IPF + + E
Sbjct: 98 VRENSVSSIENVSSSAVARETQSSANILVKDNHFFSHKQKKIQRESIPFHKRDNIE 153
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 158 VERNSGSPXEQSSASLRIDTKVK-FIDSRGDDVRSHRESKVQADEIP 295
+E+N S S ASL +T K F++ ++ ++ R+ + Q + P
Sbjct: 37 IEKNHSSSVTASQASLAFNTSEKLFVNENAEERKNSRDLRKQLPDRP 83
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 281 ADEIPFREPEETEGFYNRPQGRGKVSSKSGRARTVSIQSSGSS 409
A ++ + + G Y P RG+ S+ S R + + SSGS+
Sbjct: 435 ASKLAAKPSVKPAGAYRPPGARGQNSTFSYRREEIDVMSSGSA 477
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +2
Query: 239 RGDDVRSHRESKVQADEIPFREPEETEGFYNRPQ 340
R D E K ++P REP+ F N P+
Sbjct: 423 RNKDAEDIYEEKELESKVPIREPKSFADFKNHPE 456
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,346,277
Number of Sequences: 5004
Number of extensions: 70623
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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