Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I08
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0239 - 18582930-18583030,18583137-18583205,18583338-18583590 32 0.47
06_03_0241 - 18607950-18608050,18608158-18608226,18608374-18608611 32 0.62
09_06_0081 + 20745627-20748144,20748211-20748308 31 1.4
02_02_0363 + 9446055-9446524,9446658-9446771,9446856-9447281,944... 30 1.9
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 30 2.5
05_04_0051 + 17511696-17512526 29 3.3
12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152... 29 5.8
05_07_0359 - 29539294-29540832,29542366-29542518 29 5.8
04_04_0423 - 25102305-25102489,25102571-25102717,25103079-251031... 29 5.8
08_02_1107 + 24357113-24357288,24357530-24357590,24358736-24359575 28 7.7
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 28 7.7
02_03_0394 + 18546089-18546323,18546784-18546986,18547598-185477... 28 7.7
>06_03_0239 - 18582930-18583030,18583137-18583205,18583338-18583590
Length = 140
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 603 SILTDMNLLCCSAYACNNTGTFQSHMLSHCQVLGCSQECQHICS 472
S + D +L C++ C+N TF + + V C++ C H C+
Sbjct: 87 SDVLDFCMLGCTSSMCSNMNTFADNEEGNVVVERCNEACYHFCN 130
>06_03_0241 - 18607950-18608050,18608158-18608226,18608374-18608611
Length = 135
Score = 31.9 bits (69), Expect = 0.62
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 591 DMNLLCCSAYACNNTGTFQSHMLSHCQVLGCSQECQHICS 472
D +L C++ C+N TF + + V C++ C H C+
Sbjct: 86 DFCMLGCTSSVCSNINTFAGNEEGNGAVERCNEACYHFCN 125
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/52 (38%), Positives = 21/52 (40%)
Frame = +3
Query: 627 PMLLPGQQNLARPFPPPPASEINGVLGPGPAHQVGLLGPFDTPXGFXVGPKT 782
P L LA P P PPA + P PA P D P GF V P T
Sbjct: 260 PHLRAPSCTLAPPAPTPPAPTFHVPTPPTPATPAP---PADVPPGFTVSPTT 308
>02_02_0363 +
9446055-9446524,9446658-9446771,9446856-9447281,
9447812-9447893,9447964-9448020,9448633-9448881,
9448978-9449109,9449163-9449291
Length = 552
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Frame = +3
Query: 471 YCKCVDTPDCNPRPGSARACGS-GKYLCCYKRKQSNKVNSYQSEYFNEVEDERPMLLPGQ 647
Y +C + C R R+ ++ Y + ++ ++++ ++ P
Sbjct: 197 YYRCSSSKGCPARKQVERSRSDPNTFILTYTGEHNHSAPTHRNSLAGTTRNKLPSSSAAS 256
Query: 648 QNLARPFPPPPASEINGVLGPGPAHQVGL--LGPFDTP 755
A+P PPPP+ + G G G A GL P TP
Sbjct: 257 AASAQPQPPPPSVVVVGA-GGGGAEAAGLSPTTPLRTP 293
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = -3
Query: 705 QELRLFRKQEAGGRAGLSSVVPAIAWDARLPLR*SILTDMNLLCCSAYACNNTGTFQSHM 526
+ELRL A G + + +++P +RL LR D +L C A++C + GT + M
Sbjct: 175 EELRL----RAAGVSLVGALLPRCPALSRLSLRMESDVDATILACLAFSCPSLGTLEISM 230
>05_04_0051 + 17511696-17512526
Length = 276
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +3
Query: 639 PGQQNLARPFPPPPASEINGVLG----PGPAHQVGLLGP 743
PG N P PPP+ EI G PGP++ + +GP
Sbjct: 179 PGPSNPIDPIGPPPSDEIYNRGGHHTAPGPSNPIDPIGP 217
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +3
Query: 639 PGQQNLARPFPPPPASEINGVLG----PGPAHQVGLLGP 743
PG N P PPP+ EI G PGP+ + +GP
Sbjct: 206 PGPSNPIDPIGPPPSDEIYNRGGHHTTPGPSDPIDPIGP 244
>12_01_1116 +
11914352-11914415,11915049-11915158,11915254-11915295,
11916263-11916430,11916506-11916682,11916848-11917051,
11917125-11917319
Length = 319
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 663 PFPPPPASEINGVLGPGPAHQVGLLGPFDTPXGF 764
PFPP P+ + G+ H + +L F+TP GF
Sbjct: 8 PFPPKPSLKEQGLKDHNTYHCLIVLVLFETPSGF 41
>05_07_0359 - 29539294-29540832,29542366-29542518
Length = 563
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 657 ARPFPPPPASEINGVLGPGPAHQVGLLGPF-DTPXGFXVGPKTXRKRWXP 803
A P PPPAS + +G + L+ P P GF GP RK P
Sbjct: 266 ASPVAPPPASPLKRGVGRPRKNATPLVKPGPGRPSGFKRGPGRPRKNATP 315
>04_04_0423 -
25102305-25102489,25102571-25102717,25103079-25103150,
25103305-25103327,25103792-25103863,25104064-25104112,
25104344-25104415,25104880-25104951,25105281-25105352,
25106569-25106640,25106810-25106881,25106974-25107048,
25107324-25107470,25107598-25107805,25108361-25108489,
25108563-25108769
Length = 557
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 399 QGQAVLTVDVPKDYDSDGTLDSLQYCKCVDTPDCN 503
QGQ++L+VD+ +DG L+ L+ C + + CN
Sbjct: 133 QGQSLLSVDISCSDVTDGGLNQLKDCINLQSLSCN 167
>08_02_1107 + 24357113-24357288,24357530-24357590,24358736-24359575
Length = 358
Score = 28.3 bits (60), Expect = 7.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 132 VVTAGSGSEWREIPVPRXNSLQRLC 206
V T G + WR++P P +S ++ C
Sbjct: 251 VYTLGEAASWRDVPAPAGSSRRKSC 275
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 679 GGGGKGRAKFCCPGNSMG 626
GGGG G A CCPG + G
Sbjct: 15 GGGGGGTAGACCPGAAGG 32
>02_03_0394 +
18546089-18546323,18546784-18546986,18547598-18547787,
18548624-18549015,18549495-18550055
Length = 526
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 288 RSRFVNQKKLKASITDPRXEGRYPVR 365
R F +++KL + DPR EGRYP+R
Sbjct: 342 RPLFNDRRKLP-KMADPRLEGRYPMR 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,247,204
Number of Sequences: 37544
Number of extensions: 534658
Number of successful extensions: 1976
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1969
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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