Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I08
         (812 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)               31   1.1  
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                 31   1.1  
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)              30   1.9  
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)                   29   3.4  
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      29   3.4  
SB_43713| Best HMM Match : Na_Ca_ex (HMM E-Value=7.9e-32)              29   4.5  
SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_24563| Best HMM Match : Mad3_like (HMM E-Value=0.71)                29   5.9  
SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    28   7.8  
SB_24348| Best HMM Match : TPR_2 (HMM E-Value=2.1e-17)                 28   7.8  

>SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)
          Length = 602

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +2

Query: 179 PXEQSSASLRIDTKVKFIDSRGDDVRSHRESKVQADEIPFREPEETE 319
           P ++S  S++   K+ F+D  G+ + +  + K +A  IP+R+ + T+
Sbjct: 80  PDDESGFSIQRHGKLSFVDLAGNCISALSDQKKRAGHIPYRDSKLTK 126


>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 352

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 630 MLLPGQQNLARP--FPPPPASEINGVLGPGPAHQVGLLGPFDTPXGFXVGP 776
           M L GQ+N   P    PPPA    GVL P PA   G+L P   P G  + P
Sbjct: 163 MALLGQKNSVSPGILAPPPAPP--GVLAPPPA-PPGVLPPPPAPPGALIPP 210


>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -3

Query: 552 NTGTFQSHMLSHCQVLGCSQECQHICSTAENQEFHLNRSL*VHQQSKQLDPELCMETV-R 376
           +T TFQSH+++ C            C T   Q   + R+L  H  S+ +   L   T+ R
Sbjct: 726 HTHTFQSHLVTPCDTHTFQSHLVTPCHTRTFQSHPVTRTLSSHTLSRPVTRTLSSHTLSR 785

Query: 375 ALPLLLDTFPL 343
            +   L  FP+
Sbjct: 786 PVTRTLSNFPV 796


>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
          Length = 888

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 360 VRVEEHAQSP-YRV-QGQAVLTVDVPKDYDSDGTLDSLQYCKCV 485
           V+  +H Q P YR+ Q QAV TV      DS    DS Q+ +CV
Sbjct: 388 VQTTQHRQCPPYRLYQAQAVRTVQTLPSTDSAHRTDSTQHRQCV 431


>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 233 DSRGDDVRSHRESKVQADEI-PFREPEETEGFYNRPQGRGKVSSKSGRA 376
           +S GDD +S RES  + D+    ++ E  EG+YN      KV    G A
Sbjct: 17  ESNGDD-KSKRESTQEGDKRRKGKKGERLEGYYNSSMNNSKVKPVVGAA 64


>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
          Length = 300

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 450 GTLDSLQYCKCVDTPDCNPRPGSARACGSGKY 545
           G +D  Q+C C +   CNP  G    C SG Y
Sbjct: 181 GGVDCRQHCNCTEWGTCNPFTGKC-LCQSGFY 211


>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 587

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 531 HMLSHCQVLGCSQECQHICSTAENQEFHLNRSL*VHQQSKQLDPELCMETVRALP 367
           H+L H   L    +C+ ICS +  ++  LNR L  H         +C+E V+ LP
Sbjct: 347 HLLVHS--LEKPYQCE-ICSKSFTRKDCLNRHLMTHVDPSMRKKHVCLECVKVLP 398


>SB_43713| Best HMM Match : Na_Ca_ex (HMM E-Value=7.9e-32)
          Length = 228

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 12  QQRARGALAFNVHSSLIN*FTFANVCDSFFVNH*KYVC 125
           Q++ +G + F+V  ++      A VCD +FV+  + +C
Sbjct: 5   QRQKQGGIVFHVFVAIYTFAALATVCDEYFVSSLERIC 42


>SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 531 GSGKYLCCYK--RKQSNKVNSYQSEYFNEVEDERPMLLPGQQNLARPFPPP 677
           GSG Y  C K  RK+ NKV  +    + ++ +    +L  + NL R    P
Sbjct: 16  GSGSYGICKKIRRKKDNKVLVWMELDYGQMSETEKQMLVSEVNLLRELKHP 66


>SB_24563| Best HMM Match : Mad3_like (HMM E-Value=0.71)
          Length = 235

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +3

Query: 534 SGKYLCCYKR-KQSNKV--NSYQSEYFNEVEDERPMLLPGQQNLARP-FPPPPASEINGV 701
           SGK+    KR K++ K+     Q    N V D R       QNL +  +PPPP  + NG+
Sbjct: 147 SGKHNLSEKRHKRTEKIPFEERQKVVNNPVRDLR------YQNLVKTLYPPPPPRDSNGI 200

Query: 702 LGP 710
           + P
Sbjct: 201 MAP 203


>SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -3

Query: 579 LCCSAYACNNTGTFQS--HMLSHCQVLGCSQECQHICSTAENQEFHLNRSL*VHQQSK 412
           +CCS   CN     Q   H L HC+   C+Q    I        +H++    VH  S+
Sbjct: 170 MCCSVVHCNQAIELQPTYHPLCHCE--QCAQRQNIITKETGAHVYHVHNRTHVHISSE 225


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 642 GQQNL-ARPFPPPPASEINGVLGPGPAHQVGLLGPFDTP 755
           GQ  +  RP  P    +   + GPGPA Q G+ GP   P
Sbjct: 219 GQAGIDGRPGEPGLPGDKGAMGGPGPAGQPGIRGPSGAP 257


>SB_24348| Best HMM Match : TPR_2 (HMM E-Value=2.1e-17)
          Length = 463

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 5/118 (4%)
 Frame = +3

Query: 162 REIPVPRXNSLQRLCV*TQKLNSLTAAVTMSDPTVNPRCKQTRSRFVNQKKLKASITDPR 341
           +E PV   N   ++    Q   S  +       TV+P+    RS      K  A +   +
Sbjct: 123 KEEPVSSTNKKSKIK--PQNRMSQESKANKEKKTVDPKNTYDRSIAKELNKGMALLDKQK 180

Query: 342 XEG--RYPVR-VEEHAQSPYRVQGQAVLTVDVPKDYDSDGTLDSL--QYCKCVDTPDC 500
            E   RY  + VEEH +SP  + G+AV    +     S+  L      Y K  + PDC
Sbjct: 181 VEDALRYFRQLVEEHPKSPLALYGKAVALDKLADQRRSNDLLQECIQNYRKIPELPDC 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,116,824
Number of Sequences: 59808
Number of extensions: 582480
Number of successful extensions: 1773
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1769
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)