Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I07
         (1304 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9ZQI0 Cluster: Putative uncharacterized protein At2g27...    36   3.1  
UniRef50_Q76KW3 Cluster: Hydroxyproline-rich glycoprotein-2; n=1...    35   5.3  

>UniRef50_Q9ZQI0 Cluster: Putative uncharacterized protein At2g27380;
            n=6; core eudicotyledons|Rep: Putative uncharacterized
            protein At2g27380 - Arabidopsis thaliana (Mouse-ear
            cress)
          Length = 761

 Score = 35.5 bits (78), Expect = 3.1
 Identities = 21/74 (28%), Positives = 28/74 (37%)
 Frame = +1

Query: 787  IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
            + PPP  K        P +  P    P   + PP+       PP    S  P+ P PP  
Sbjct: 352  VKPPPVHKPPTPIYSPPVKPPPVHKPPTPIYSPPVKPPPIQKPPTPTYS-PPIKP-PPLQ 409

Query: 967  KPYRPHHXXXLXLP 1008
            KP  P +   + LP
Sbjct: 410  KPPTPTYSPPIKLP 423


>UniRef50_Q76KW3 Cluster: Hydroxyproline-rich glycoprotein-2; n=1;
           Pisum sativum|Rep: Hydroxyproline-rich glycoprotein-2 -
           Pisum sativum (Garden pea)
          Length = 155

 Score = 34.7 bits (76), Expect = 5.3
 Identities = 24/96 (25%), Positives = 28/96 (29%)
 Frame = +1

Query: 697 PXKTXHRFXKXKHXXXPXCXXATNPKXXXFIXPPPXKKKTXXXXXXPXQXXPQXLXPXEX 876
           P    H      H   P     + P    +  PPP  KK+      P         P   
Sbjct: 48  PPPPVHSPPPPYHYSSPPPPVHSPPPPYHYSSPPPPPKKSYKYSSPPPPIYKYKSPPPPV 107

Query: 877 FFPPLLHTXXXNPPPXXXSGXPLXPXPPXXKPYRPH 984
             PP  +     PPP   S     P PP  K   PH
Sbjct: 108 HSPPPPYHYSSPPPPPKKSYKYSSPPPPVYKYKSPH 143


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 627,395,376
Number of Sequences: 1657284
Number of extensions: 7486358
Number of successful extensions: 14291
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13019
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 134034067229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)