Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I07
         (1304 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.0  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.0  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  29   8.2  

>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
 Frame = +1

Query: 793 PPPXKKKTXXXXXXPXQXXPQXLXPXEXF--FPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
           PPP           P    P    P      +PP L+    NPPP      P    PP  
Sbjct: 125 PPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPN 184

Query: 967 KPYRP 981
            PY P
Sbjct: 185 PPYPP 189


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 18/65 (27%), Positives = 20/65 (30%)
 Frame = +1

Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
           + PPP           P    P    P     PP   T    PPP   +G P  P P   
Sbjct: 344 VNPPPPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPPTNG 403

Query: 967 KPYRP 981
            P  P
Sbjct: 404 PPPPP 408


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 20/75 (26%), Positives = 21/75 (28%)
 Frame = +1

Query: 793  PPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXXKP 972
            PPP           P    P    P +   PP        PPP      P  P PP   P
Sbjct: 368  PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPP 427

Query: 973  YRPHHXXXLXLPXPR 1017
              P     L    PR
Sbjct: 428  PPPPPALRLACAPPR 442


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,025,730
Number of Sequences: 59808
Number of extensions: 214463
Number of successful extensions: 400
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 4129154750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)