Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I07
         (1304 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-16|CAA99907.2|  445|Caenorhabditis elegans Hypothetical p...    29   5.5  
Z74474-4|CAA98956.2|  445|Caenorhabditis elegans Hypothetical pr...    29   5.5  

>Z75547-16|CAA99907.2|  445|Caenorhabditis elegans Hypothetical
            protein K10C8.3a protein.
          Length = 445

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 1175 PKNXHPXXPPXKHIXPPPHXXNIKNXSIHRXPTRXHTSF 1291
            P N HP  PP        H  ++   +I+  P+R H  F
Sbjct: 276  PPNRHPNEPPQDDENIYDHIPDVSGGNIYEVPSRDHYDF 314


>Z74474-4|CAA98956.2|  445|Caenorhabditis elegans Hypothetical protein
            K10C8.3a protein.
          Length = 445

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 1175 PKNXHPXXPPXKHIXPPPHXXNIKNXSIHRXPTRXHTSF 1291
            P N HP  PP        H  ++   +I+  P+R H  F
Sbjct: 276  PPNRHPNEPPQDDENIYDHIPDVSGGNIYEVPSRDHYDF 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,792
Number of Sequences: 27780
Number of extensions: 189342
Number of successful extensions: 329
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3642337300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)