Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I07
(1304 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 36 0.077
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 32 0.72
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 30 3.8
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 30 3.8
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c... 29 5.1
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 29 6.7
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 29 6.7
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 29 6.7
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 29 6.7
At1g75550.1 68414.m08780 glycine-rich protein 29 8.9
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 35.5 bits (78), Expect = 0.077
Identities = 21/74 (28%), Positives = 28/74 (37%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
+ PPP K P + P P + PP+ PP S P+ P PP
Sbjct: 352 VKPPPVHKPPTPIYSPPVKPPPVHKPPTPIYSPPVKPPPIQKPPTPTYS-PPIKP-PPLQ 409
Query: 967 KPYRPHHXXXLXLP 1008
KP P + + LP
Sbjct: 410 KPPTPTYSPPIKLP 423
Score = 33.5 bits (73), Expect = 0.31
Identities = 21/74 (28%), Positives = 27/74 (36%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
I PPP +K P P P + PP+ PP S P+ P PP
Sbjct: 82 IYPPPIQKPPTPTYSPPIYPPPIQKPPTPTYSPPIYPPPIQKPPTPTYS-PPIYP-PPIQ 139
Query: 967 KPYRPHHXXXLXLP 1008
KP P + + P
Sbjct: 140 KPPTPSYSPPVKPP 153
Score = 33.5 bits (73), Expect = 0.31
Identities = 21/74 (28%), Positives = 27/74 (36%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
I PPP K P + P P + PP+ PP S P+ P PP
Sbjct: 553 IKPPPIHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYS-PPIKP-PPVH 610
Query: 967 KPYRPHHXXXLXLP 1008
KP P + + P
Sbjct: 611 KPPTPTYSPPIKPP 624
Score = 33.5 bits (73), Expect = 0.31
Identities = 21/74 (28%), Positives = 27/74 (36%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
I PPP K P + P P + PP+ PP S P+ P PP
Sbjct: 587 IKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYS-PPIKP-PPVH 644
Query: 967 KPYRPHHXXXLXLP 1008
KP P + + P
Sbjct: 645 KPPTPTYSPPIKPP 658
Score = 33.1 bits (72), Expect = 0.41
Identities = 21/74 (28%), Positives = 27/74 (36%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
I PPP K P + P P + PP+ PP S P+ P PP
Sbjct: 536 IKPPPVHKPPTPTYSPPIKPPPIHKPPTPTYSPPIKPPPVHKPPTPTYS-PPIKP-PPVH 593
Query: 967 KPYRPHHXXXLXLP 1008
KP P + + P
Sbjct: 594 KPPTPTYSPPIKPP 607
Score = 32.3 bits (70), Expect = 0.72
Identities = 20/65 (30%), Positives = 24/65 (36%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
I PPP K P + P P + PP+ PP S P+ P PP
Sbjct: 200 IKPPPVHKPPTPIYSPPIKPPPVHKPPTPTYSPPVKPPPVHKPPTPIYS-PPIKP-PPVH 257
Query: 967 KPYRP 981
KP P
Sbjct: 258 KPPTP 262
Score = 31.9 bits (69), Expect = 0.95
Identities = 20/74 (27%), Positives = 28/74 (37%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
I PPP +K P + P + P + PP+ PP S P+ PP
Sbjct: 133 IYPPPIQKPPTPSYSPPVKPPPVQMPPTPTYSPPIKPPPVHKPPTPTYS-PPI--KPPVH 189
Query: 967 KPYRPHHXXXLXLP 1008
KP P + + P
Sbjct: 190 KPPTPIYSPPIKPP 203
Score = 31.9 bits (69), Expect = 0.95
Identities = 20/74 (27%), Positives = 25/74 (33%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
I PPP K P + P P + PP+ PP S P PP
Sbjct: 251 IKPPPVHKPPTPIYSPPVKPPPVQTPPTPIYSPPVKPPPVHKPPTPTYS--PPVKSPPVQ 308
Query: 967 KPYRPHHXXXLXLP 1008
KP P + + P
Sbjct: 309 KPPTPTYSPPIKPP 322
Score = 31.9 bits (69), Expect = 0.95
Identities = 22/74 (29%), Positives = 28/74 (37%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
I PPP K T P + P P + PP+ PP S P+ P PP
Sbjct: 520 IKPPPVKPPTPTYSP-PIKPPPVHKPPTPTYSPPIKPPPIHKPPTPTYS-PPIKP-PPVH 576
Query: 967 KPYRPHHXXXLXLP 1008
KP P + + P
Sbjct: 577 KPPTPTYSPPIKPP 590
Score = 31.9 bits (69), Expect = 0.95
Identities = 21/74 (28%), Positives = 28/74 (37%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
I PPP +K P + P L P + PP+ PP S P+ P PP
Sbjct: 655 IKPPPVQKPPTPTYSPPVKPPPVQLPPTPTYSPPVKPPPVQVPPTPTYS-PPVKP-PPVQ 712
Query: 967 KPYRPHHXXXLXLP 1008
P P + + P
Sbjct: 713 VPPTPTYSPPIKPP 726
Score = 30.7 bits (66), Expect = 2.2
Identities = 19/74 (25%), Positives = 27/74 (36%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
+ PPP +K P + P P + PP+ PP P+ P PP
Sbjct: 486 VQPPPVQKPPTPTYSPPVKPPPIQKPPTPTYSPPI--KPPPVKPPTPTYSPPIKP-PPVH 542
Query: 967 KPYRPHHXXXLXLP 1008
KP P + + P
Sbjct: 543 KPPTPTYSPPIKPP 556
Score = 30.3 bits (65), Expect = 2.9
Identities = 20/88 (22%), Positives = 29/88 (32%)
Frame = +1
Query: 745 PXCXXATNPKXXXFIXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPX 924
P P + PPP + P + P P + PP+ + PP
Sbjct: 136 PPIQKPPTPSYSPPVKPPPVQMPPTPTYSPPIKPPPVHKPPTPTYSPPI--KPPVHKPPT 193
Query: 925 XXSGXPLXPXPPXXKPYRPHHXXXLXLP 1008
P+ P PP KP P + + P
Sbjct: 194 PIYSPPIKP-PPVHKPPTPIYSPPIKPP 220
Score = 30.3 bits (65), Expect = 2.9
Identities = 20/74 (27%), Positives = 26/74 (35%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
I PPP K P + P P + PP+ PP S P+ P P
Sbjct: 570 IKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYS-PPIKPPP-VH 627
Query: 967 KPYRPHHXXXLXLP 1008
KP P + + P
Sbjct: 628 KPPTPTYSPPIKPP 641
Score = 29.9 bits (64), Expect = 3.8
Identities = 19/65 (29%), Positives = 23/65 (35%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
I PPP K P + P P + PP+ PP S P+ P PP
Sbjct: 217 IKPPPVHKPPTPTYSPPVKPPPVHKPPTPIYSPPIKPPPVHKPPTPIYS-PPVKP-PPVQ 274
Query: 967 KPYRP 981
P P
Sbjct: 275 TPPTP 279
Score = 29.9 bits (64), Expect = 3.8
Identities = 18/65 (27%), Positives = 24/65 (36%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
+ PPP +K P + P P + PP+ PP P+ P PP
Sbjct: 386 VKPPPIQKPPTPTYSPPIKPPPLQKPPTPTYSPPI--KLPPVKPPTPIYSPPVKP-PPVH 442
Query: 967 KPYRP 981
KP P
Sbjct: 443 KPPTP 447
Score = 29.9 bits (64), Expect = 3.8
Identities = 20/74 (27%), Positives = 26/74 (35%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
I PPP K P + P P + PP+ PP S P+ P P
Sbjct: 604 IKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYS-PPIKPPP-VQ 661
Query: 967 KPYRPHHXXXLXLP 1008
KP P + + P
Sbjct: 662 KPPTPTYSPPVKPP 675
Score = 29.9 bits (64), Expect = 3.8
Identities = 20/74 (27%), Positives = 26/74 (35%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
I PPP K P + P P + PP+ PP S P+ P PP
Sbjct: 621 IKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVQKPPTPTYS-PPVKP-PPVQ 678
Query: 967 KPYRPHHXXXLXLP 1008
P P + + P
Sbjct: 679 LPPTPTYSPPVKPP 692
Score = 29.5 bits (63), Expect = 5.1
Identities = 19/74 (25%), Positives = 26/74 (35%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
+ PPP K P + P P + PP+ PP P+ P PP
Sbjct: 436 VKPPPVHKPPTPIYSPPVKPPPVHKPPTPTYSPPI--KPPPVKPPTPTYSPPVQP-PPVQ 492
Query: 967 KPYRPHHXXXLXLP 1008
KP P + + P
Sbjct: 493 KPPTPTYSPPVKPP 506
Score = 29.5 bits (63), Expect = 5.1
Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXP--P 960
I PPP K T P Q P P + PP+ PP S P+ P P P
Sbjct: 470 IKPPPVKPPTPTYSP-PVQPPPVQKPPTPTYSPPVKPPPIQKPPTPTYS-PPIKPPPVKP 527
Query: 961 XXKPYRP 981
Y P
Sbjct: 528 PTPTYSP 534
Score = 29.1 bits (62), Expect = 6.7
Identities = 17/62 (27%), Positives = 21/62 (33%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
I PPP +K P P P + PP+ PP S P+ P P
Sbjct: 99 IYPPPIQKPPTPTYSPPIYPPPIQKPPTPTYSPPIYPPPIQKPPTPSYS-PPVKPPPVQM 157
Query: 967 KP 972
P
Sbjct: 158 PP 159
Score = 29.1 bits (62), Expect = 6.7
Identities = 19/74 (25%), Positives = 26/74 (35%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
+ PPP K P + P P + PP+ PP S P+ P P
Sbjct: 234 VKPPPVHKPPTPIYSPPIKPPPVHKPPTPIYSPPVKPPPVQTPPTPIYS-PPVKPPP-VH 291
Query: 967 KPYRPHHXXXLXLP 1008
KP P + + P
Sbjct: 292 KPPTPTYSPPVKSP 305
Score = 28.7 bits (61), Expect = 8.9
Identities = 20/74 (27%), Positives = 26/74 (35%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
I PPP +K P P P + PP+ PP S P+ P P
Sbjct: 116 IYPPPIQKPPTPTYSPPIYPPPIQKPPTPSYSPPVKPPPVQMPPTPTYS-PPIKPPP-VH 173
Query: 967 KPYRPHHXXXLXLP 1008
KP P + + P
Sbjct: 174 KPPTPTYSPPIKPP 187
Score = 28.7 bits (61), Expect = 8.9
Identities = 19/71 (26%), Positives = 25/71 (35%)
Frame = +1
Query: 796 PPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXXKPY 975
PP K P + P P + PP+ PP S P+ P PP KP
Sbjct: 186 PPVHKPPTPIYSPPIKPPPVHKPPTPIYSPPIKPPPVHKPPTPTYS-PPVKP-PPVHKPP 243
Query: 976 RPHHXXXLXLP 1008
P + + P
Sbjct: 244 TPIYSPPIKPP 254
Score = 28.7 bits (61), Expect = 8.9
Identities = 17/62 (27%), Positives = 22/62 (35%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXX 966
+ PPP K P + P P + PP+ PP S P+ P PP
Sbjct: 285 VKPPPVHKPPTPTYSPPVKSPPVQKPPTPTYSPPIKPPPVQKPPTPTYS-PPIKP-PPVK 342
Query: 967 KP 972
P
Sbjct: 343 PP 344
Score = 28.7 bits (61), Expect = 8.9
Identities = 15/58 (25%), Positives = 21/58 (36%)
Frame = +1
Query: 787 IXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPP 960
+ PPP + P + P + P + PP+ PPP P P PP
Sbjct: 689 VKPPPVQVPPTPTYSPPVKPPPVQVPPTPTYSPPI------KPPPVQVPPTPTTPSPP 740
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 32.3 bits (70), Expect = 0.72
Identities = 18/60 (30%), Positives = 20/60 (33%)
Frame = +1
Query: 793 PPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPPXXKP 972
PPP T P P P + PP +PPP S P P PP P
Sbjct: 523 PPPSPAPTPVYCTRPPPPPPHSPPPPQFSPPPPEPYYYSSPPPPHSSPPPHSPPPPHSPP 582
Score = 31.1 bits (67), Expect = 1.7
Identities = 21/82 (25%), Positives = 23/82 (28%)
Frame = +1
Query: 769 PKXXXFIXPPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLX 948
P + PPP P P P + PP PPP S P
Sbjct: 444 PPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPP--PPSPPPPPPPVYSPPPPP 501
Query: 949 PXPPXXKPYRPHHXXXLXLPXP 1014
P PP Y P P P
Sbjct: 502 PPPPPPPVYSPPPPPVYSSPPP 523
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 29.9 bits (64), Expect = 3.8
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +1
Query: 883 PPLLHTXXXNPPPXXXSGXPLXPXPPXXKPYRPHHXXXLXLP 1008
PPL H +PPP S P PP P P L P
Sbjct: 1126 PPLPHESPPSPPPQPPSSPPPPSSPPQLAPAPPPSDHCLPPP 1167
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 29.9 bits (64), Expect = 3.8
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +1
Query: 910 NPPPXXXSGXP---LXPXPPXXKPYRPHHXXXLXLPXP 1014
+PPP G P + P PP PY +H + +P P
Sbjct: 174 HPPPPPVWGPPHGYMAPAPPPYDPYAGYHAPPVPMPTP 211
>At1g27750.1 68414.m03391 ubiquitin system component Cue
domain-containing protein very low similarity to ASC-1
complex subunit P100 [Homo sapiens] GI:12061187; contains
Pfam profile PF02845: CUE domain
Length = 1973
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +1
Query: 793 PPPXKKKTXXXXXXPXQXXPQXLXPXEXFFPPLLHTXXXNPPPXXXSGXPLXPXPP 960
PPP P Q Q P PP PPP S PL P PP
Sbjct: 848 PPPLGHSLPSVLQPPLQPQSQPPEPPPEMMPPPPQAL---PPPLPHSHPPLVPPPP 900
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 29.1 bits (62), Expect = 6.7
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 880 FPPLLHTXXXNPPPXXXSGXPLXPXPPXXKPYRPHH 987
FPP H P +G P+ P P++PHH
Sbjct: 56 FPPPPHLNSPRPGFDSFTGPPVRPPQNHYPPWQPHH 91
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 29.1 bits (62), Expect = 6.7
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 880 FPPLLHTXXXNPPPXXXSGXPLXPXPPXXKPYRPHH 987
FPP H P +G P+ P P++PHH
Sbjct: 56 FPPPPHLNSPRPGFDSFTGPPVRPPQNHYPPWQPHH 91
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 29.1 bits (62), Expect = 6.7
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Frame = +1
Query: 835 PXQXXPQXLXPXEXFFPPLLHTXXXN--PPPXXXSGXPLXPXPPXXKPYRPHHXXXLXLP 1008
P PQ P + PP++ PPP G P+ PP RP P
Sbjct: 140 PGMMQPQISRPPQLSAPPIIRPPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPP 199
Query: 1009 XPR 1017
P+
Sbjct: 200 PPQ 202
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 29.1 bits (62), Expect = 6.7
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Frame = +1
Query: 835 PXQXXPQXLXPXEXFFPPLLHTXXXN--PPPXXXSGXPLXPXPPXXKPYRPHHXXXLXLP 1008
P PQ P + PP++ PPP G P+ PP RP P
Sbjct: 140 PGMMQPQISRPPQLSAPPIIRPPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPP 199
Query: 1009 XPR 1017
P+
Sbjct: 200 PPQ 202
>At1g75550.1 68414.m08780 glycine-rich protein
Length = 167
Score = 28.7 bits (61), Expect = 8.9
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = -1
Query: 977 RYGXXFGGXGXSGXPEXXXGGGLXIXVWSRGGKKXSXGXRXWGXXWXG 834
R+G GG G G GGG W GG G WG G
Sbjct: 66 RWGWGGGGGGGGGGGGGGGGGGGGGGGWGWGGGGGGGGWYKWGCGGGG 113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,589,050
Number of Sequences: 28952
Number of extensions: 185160
Number of successful extensions: 693
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3393307944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -