Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I06
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                120   2e-27
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)                    31   1.6  
SB_57110| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-22)                 29   3.7  
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 29   3.7  
SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)                  29   4.8  
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   29   6.4  
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)         28   8.5  
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)                28   8.5  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score =  120 bits (289), Expect = 2e-27
 Identities = 68/150 (45%), Positives = 93/150 (62%)
 Frame = +2

Query: 26  MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 205
           MAAG LYTYP++FRA K LIAA+YSGT ++V P F FG+ N + +FLKKFP GKVPAFE+
Sbjct: 1   MAAGKLYTYPDSFRAQKILIAAEYSGTKIEV-PAFTFGKDNHTAEFLKKFPLGKVPAFET 59

Query: 206 ADGKVLLTESNAIAYYVANESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQ 385
                            AN   R   L T      + +++D ELLPA+  WVFP  G+MQ
Sbjct: 60  K---------------TANACTRAMPLLTT-----YVNFADQELLPAAATWVFPTYGMMQ 99

Query: 386 FNKQNVERAKSDLLAALKVLDGHLLTRTFL 475
           ++KQ+ ++A  D+   + +L+  LL +TFL
Sbjct: 100 YHKQSTDKAMEDVKKYMTMLNDVLLMKTFL 129


>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
          Length = 505

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 59  NFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESN 238
           N   +K +   Q   +  K+ P  V GE N   + +KK     +P      GK +  + +
Sbjct: 105 NIGKFKMVWIDQIDESTKKLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIREKRS 164

Query: 239 AIAYYVANESL 271
            I   + N+SL
Sbjct: 165 IIVNDIENDSL 175


>SB_57110| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-22)
          Length = 559

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 142 LAKYEIRCYFHISPGILCGDQRFISAEVFRISVKYPGRHGWSFRKE 5
           L K  +R   +I    L   + FI+  V  +S+   G+H WSF KE
Sbjct: 200 LRKDSLRTVSNILVAALALSELFITVVVIPLSIIAYGKHLWSFHKE 245


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
 Frame = +2

Query: 176 PAGKVPAFESADGKVLLTESNAIAYYVA--NESLRGGDLATQARVWQWASWSDSELLPAS 349
           P   +P  E+ +G      SN I  Y+A  ++ L G DL  + +V QW   +  +   A 
Sbjct: 45  PFNTLPLLETKEGTFF--SSNTIIRYLAASSDKLYGSDLFQRGQVDQWLDITTCDFEAAV 102

Query: 350 CAWVFPYLGIMQFNKQNVERAK--SDLLAALKVLDGHLLTRTFL 475
            A      G      ++VE AK  +D+   L  ++ HL  R FL
Sbjct: 103 AAVAIAKEG------RDVEGAKIVADINKFLGFVEKHLAGRKFL 140


>SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 281 DLATQARVWQWASWSDSELLPASCA 355
           DL T A+V+ WA W   ++   SCA
Sbjct: 78  DLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)
          Length = 141

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 281 DLATQARVWQWASWSDSELLPASCA 355
           DL T A+V+ WA W   ++   SCA
Sbjct: 78  DLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 188 LFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 69
           +FR +  + +     S ++ N V +SHQSR IV   T+ K
Sbjct: 102 VFRSKQQAPNKAVGRSDEVTNEVAVSHQSRRIVESETVRK 141


>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
          Length = 1898

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 656 SSYIRP*KVPGVSWCTEQEGGQKRXXCEKKEHPRKG 763
           S  I P +V GV WC E +  Q R   + K   R+G
Sbjct: 227 SETIPPERVLGVQWCIESDSLQFRITLQDKPIKRRG 262


>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
          Length = 245

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = -3

Query: 586 R*TFISDERTLGSSTCWKACSSVLKTMTSASVILSVTKEGACEKMSVQY 440
           R T+ SD RT  S+T    C  +  T TS S   S T  G C  +S  Y
Sbjct: 23  RCTYTSD-RTTTSTTTIGVCPIIRCTYTSDSSTTSATTIGVCSIISCTY 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,274,661
Number of Sequences: 59808
Number of extensions: 605623
Number of successful extensions: 1555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)