Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I05
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 236 3e-63
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 175 7e-45
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 69 1e-12
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 59 9e-10
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 44 2e-05
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 40 3e-04
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 35 0.017
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 34 0.029
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 31 0.27
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 31 0.27
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 28 1.9
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos... 27 3.3
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 27 3.3
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 27 4.4
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 27 4.4
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 27 4.4
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 5.8
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 26 7.7
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 26 7.7
SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce... 26 7.7
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 236 bits (577), Expect = 3e-63
Identities = 121/246 (49%), Positives = 165/246 (67%), Gaps = 7/246 (2%)
Frame = +2
Query: 122 GRVGTNLKVGIVGVPNVGKSTFFNVLTKSQAA-AENFPFCTIDPNESRVPVPDERYDYLC 298
GR G NLK GIVG+PNVGKSTFF +TKS N+P+ TIDP E++V VPDER+D+LC
Sbjct: 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLC 74
Query: 299 EYHKPASKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNLCRAFDDEDVIHV 478
E +KP S+VPAFL V DIAGL +GA+ G GLGNAFLSH++A DAI+ + RAFDD ++IHV
Sbjct: 75 EAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHV 134
Query: 479 DGDVNPVRDLETIAEELRLKDEEQLLQHIEKLDRVVNRGG---EKKLKPEYDS-LAKVKT 646
+GDV+P+RDL I +EL +KD E + +H+E L ++ +RG E K K E + + KV
Sbjct: 135 EGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQ 194
Query: 647 ILVDEKKHIXFGDWSAADIEV*INTCS*L--QNPLYTSXIYLKRTTLXKRTXGXKAQEWI 820
L + K+ I GDWS ++E+ IN+ L + +Y + + K K ++WI
Sbjct: 195 YLTETKQPIRKGDWSNREVEI-INSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIKKWI 253
Query: 821 DKNDPG 838
D+N PG
Sbjct: 254 DENSPG 259
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 175 bits (426), Expect = 7e-45
Identities = 93/243 (38%), Positives = 145/243 (59%), Gaps = 3/243 (1%)
Frame = +2
Query: 119 IGRVGTNLKVGIVGVPNVGKSTFFNVLTKSQAA-AENFPFCTIDPNESRVPVPDERYDYL 295
+GR G +LK+GIVG+PN+GKST F +LTK+ N+PF TIDP ++ PV D +Y+ L
Sbjct: 39 LGRPGNHLKIGIVGMPNIGKSTLFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELL 98
Query: 296 CEYHKPASKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNLCRAFDDEDVIH 475
CE ++P +++PA L + D AGL R +++G+GLGNAFLS+I++ DA+F L RAF + V H
Sbjct: 99 CEIYQPKTRIPAQLTIYDTAGLTRNSSKGEGLGNAFLSNIRSVDALFQLVRAFPEAQVPH 158
Query: 476 VDGDVNPVRDLETIAEELRLKDEEQLLQHIEKLDRVVNRGGEKKLKPEYDSLAKVKTILV 655
V+ V+PVRDL+ I EEL LKD E L +++K R K D+ + +++
Sbjct: 159 VEKSVDPVRDLQIIQEELLLKDAEFLESYLKKEGR-----SPKTCAKALDTARRALEVVL 213
Query: 656 DEKKHIXFGDWSAADIEV*INTCS*LQNPLYTSXIYLKRTT-LXKRTXGXKA-QEWIDKN 829
+ + I +W+ I + +N+ + L + + + L K +EW++KN
Sbjct: 214 GKGRQISKAEWNDEQIPI-LNSLNLLTAKPVVYLVNMDQDDYLSDEQEALKGIKEWVEKN 272
Query: 830 DPG 838
G
Sbjct: 273 SFG 275
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 68.5 bits (160), Expect = 1e-12
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Frame = +2
Query: 128 VGTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNE-----------SRVPVP 274
+G ++ +G VG P+ GKST N LT + A NFPF TI+PN SR +
Sbjct: 1 MGRDILIGFVGKPSSGKSTMLNALTDATAKTGNFPFTTIEPNRAIGYAQIECACSRFGLQ 60
Query: 275 DERYDYLCEYHKPASKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNL 442
D+ +P + ++D+AGL+ GA G+GLGN FL ++ DA+ ++
Sbjct: 61 DKCKPIYGGCKNGVRSIP--IQLLDVAGLIPGAHAGKGLGNKFLDDLRHADALVHV 114
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 58.8 bits (136), Expect = 9e-10
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Frame = +2
Query: 134 TNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDP--NESRVPVPDERYDYLCEYH 307
T ++G+VG+PN GKST N LT S++ + F TI P + +PD+ + +Y
Sbjct: 235 TICEIGLVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKTTMPDDHSSF--QY- 291
Query: 308 KPASKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIK 418
+ DI G+++GA++G+GLG FL H++
Sbjct: 292 ----------RLADIPGIIKGASDGKGLGYDFLRHVE 318
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 44.4 bits (100), Expect = 2e-05
Identities = 30/106 (28%), Positives = 53/106 (50%)
Frame = +2
Query: 119 IGRVGTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRVPVPDERYDYLC 298
+ R G VG +G P+VGKST LT +++ A + F T+ VP +
Sbjct: 58 VARTGIGT-VGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTL------TTVPG-----VL 105
Query: 299 EYHKPASKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIF 436
+Y+ A + ++D+ G++ GA +G+G G ++ + C+ IF
Sbjct: 106 QYN------GAKIQILDLPGIIEGAKDGRGRGKQVITVARTCNLIF 145
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 40.3 bits (90), Expect = 3e-04
Identities = 28/97 (28%), Positives = 52/97 (53%)
Frame = +2
Query: 143 KVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRVPVPDERYDYLCEYHKPASK 322
+V +G P+VGKST + +TK+++A ++ F T+ + +P E YD
Sbjct: 64 RVAFIGFPSVGKSTLLSAITKTKSATASYEFTTL----TAIPGVLE-YD----------- 107
Query: 323 VPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAI 433
A + ++D+ G++ GA++G+G G +S + D I
Sbjct: 108 -GAEIQMLDLPGIIEGASQGRG-GRQAVSAARTADLI 142
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 34.7 bits (76), Expect = 0.017
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 125 RVGTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFP 232
++ ++L VG++G PNVGKS+ N L A + P
Sbjct: 265 KLKSSLTVGVIGYPNVGKSSVINALVNRSANGRSAP 300
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 33.9 bits (74), Expect = 0.029
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 152 IVGVPNVGKSTFFNVLTKSQAAAENFPFCT 241
+ G PNVGKS+F N +T++Q + + F T
Sbjct: 173 VCGYPNVGKSSFMNKVTRAQVDVQPYAFTT 202
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 30.7 bits (66), Expect = 0.27
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 140 LKVGIVGVPNVGKSTFFNVLTKSQ 211
+ VG++G PN GKS+ N L K +
Sbjct: 311 ISVGLIGFPNAGKSSIINTLRKKK 334
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 30.7 bits (66), Expect = 0.27
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 134 TNLKVGIVGVPNVGKSTFFNVLTKSQ 211
T + G+VG PNVGKS+ N L S+
Sbjct: 300 TKMTFGLVGYPNVGKSSTINALVGSK 325
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 143 KVGIVGVPNVGKSTFFNVLTKSQAA----AENFPFCTIDPN 253
KV IVG+ GKST +L K+ + + +P ID N
Sbjct: 1130 KVAIVGISGSGKSTLVELLRKTYPSEDIYIDGYPLTNIDTN 1170
>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +2
Query: 509 ETIAEELRLKDEEQLLQHIEKLDRVVNRGGEKKLKPEYDSLAKVKTILVDEKKH 670
E++ E+ K EEQ +H+E L V + + + + + V+ IL++ +K+
Sbjct: 157 ESLLEDFEAKIEEQQHKHLENLGDEVEQDWKPLVIEQIPTRDDVEAILLERRKN 210
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 539 DEEQLLQHIEKLDRVVNRGGEKKLKPEYDSLAKVKTILVDEKKHI 673
++ QL + +EK+ R + G E L ++ L LVDE+ +
Sbjct: 179 EKTQLSEKVEKMKRSTDLGAEAVLPLDFQDLRVALLSLVDERNEM 223
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 137 NLKVGIVGVPNVGKSTFFNVLTKSQAA 217
++K+ IVG NVG +T F +L AA
Sbjct: 20 SIKIVIVGAGNVGSTTAFTLLLSGLAA 46
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 302 YHKPASKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNL 442
Y+ K P FL V G V G + N + ++A IFNL
Sbjct: 570 YYTDEEKPPKFLPWVSFIGFVLGIIWISTIANEVVGILRALGVIFNL 616
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 485 DVNPVRDLETIAEELRLKDEEQLLQHIEKLDRVVNRGGEK 604
DVN D E L+DE+ L+ H+ K D +NR G K
Sbjct: 111 DVNRTHDGFRKRELFTLEDEKILIDHVHKND--INRFGTK 148
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 116 LIGRV-GTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCT 241
L RV T+ K+ I G N GKST N L E+ CT
Sbjct: 146 LFSRVEDTSSKILITGDLNAGKSTLCNALVHKDILPEDQQPCT 188
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 116 LIGRVGTNLKVGIVGVPNVGKSTFFNVL 199
LI R L + + G GK+TFFN L
Sbjct: 23 LIKRKECGLTIMLCGASGTGKTTFFNTL 50
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 389 LGNAFLSHIKACDAIFNLCRAFDDEDVIHVDGDVNPVRD 505
LG + S KA DAI L + F+D D V ++NP+ +
Sbjct: 196 LGFSSSSKPKAVDAIVKLYKVFNDCDATQV--EINPLAE 232
>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 450 ARHKLKIASQALMWDRKAFPNPWPSAAPRTRPAMSTT 340
+RH L ++ D AFP WPS +ST+
Sbjct: 46 SRHSLGKLMVSMYADSMAFPKNWPSTKENLTLVLSTS 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,047
Number of Sequences: 5004
Number of extensions: 56726
Number of successful extensions: 213
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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