Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I05
(847 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical pr... 281 3e-76
U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical pr... 48 8e-06
Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical pr... 47 1e-05
L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical p... 41 0.001
Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical pr... 36 0.027
AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical... 31 0.78
AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical ... 31 0.78
AL021571-4|CAI79270.1| 610|Caenorhabditis elegans Hypothetical ... 31 1.0
AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical ... 31 1.0
AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical ... 31 1.0
AC024818-1|AAK29945.2| 375|Caenorhabditis elegans Hypothetical ... 30 1.8
U41105-15|AAT81191.1| 298|Caenorhabditis elegans Hypothetical p... 29 3.1
U41105-14|AAA82408.2| 399|Caenorhabditis elegans Hypothetical p... 29 3.1
Z93393-17|CAB07693.2| 751|Caenorhabditis elegans Hypothetical p... 29 4.2
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 29 4.2
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z99281-8|CAB16514.1| 185|Caenorhabditis elegans Hypothetical pr... 29 5.5
AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical ... 29 5.5
AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical ... 29 5.5
AB185209-1|BAD30093.1| 185|Caenorhabditis elegans novel small G... 29 5.5
Z22181-6|CAA80185.1| 178|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z93393-2|CAB07689.2| 890|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z47075-7|CAA87384.1| 394|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z36752-8|CAA85330.1| 394|Caenorhabditis elegans Hypothetical pr... 28 9.6
U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical pr... 28 9.6
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 28 9.6
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 28 9.6
AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical ... 28 9.6
AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical ... 28 9.6
AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical ... 28 9.6
>Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical
protein W08E3.3 protein.
Length = 395
Score = 281 bits (690), Expect = 3e-76
Identities = 139/243 (57%), Positives = 178/243 (73%), Gaps = 1/243 (0%)
Frame = +2
Query: 116 LIGRVGTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRVPVPDERYDYL 295
LIGR+GTNLKVGI+G+PNVGKSTFFNVLTKS+A AENFPFCTIDPNESRV V D+R+D+L
Sbjct: 14 LIGRLGTNLKVGILGLPNVGKSTFFNVLTKSEAQAENFPFCTIDPNESRVAVQDDRFDWL 73
Query: 296 CEYHKPASKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNLCRAFDDEDVIH 475
++KPASKVPAFLNV DIAGLV+GA+EGQGLGNAFLSH+ ACDA+F+LCRAFDD+DV H
Sbjct: 74 VNHYKPASKVPAFLNVTDIAGLVKGASEGQGLGNAFLSHVSACDALFHLCRAFDDDDVTH 133
Query: 476 VDGDVNPVRDLETIAEELRLKDEEQLLQHIEKLDRVVNRGGEKKLKPEYDSLAKVKTILV 655
V+G+V+PVRDLE I+ EL KD + + ++K++++ R +K K EYD+L +VK L
Sbjct: 134 VEGEVDPVRDLEIISNELFAKDLQFIDGPLDKVEKLFTRANDKTKKIEYDTLVRVKKCL- 192
Query: 656 DEKKHIXFGDWSAADIEV*INTCS*LQNPL-YTSXIYLKRTTLXKRTXGXKAQEWIDKND 832
+EKK + W+ +IE+ P+ Y + K K K + WID ND
Sbjct: 193 EEKKPVRQELWNEKEIEILNKHLFLTAKPIVYLVNLSEKDYIRKKNKWLPKIKAWIDTND 252
Query: 833 PGS 841
G+
Sbjct: 253 AGA 255
>U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical
protein C26E6.12 protein.
Length = 390
Score = 48.0 bits (109), Expect = 8e-06
Identities = 33/138 (23%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Frame = +2
Query: 146 VGIVGVPNVGKSTFFNVLTKSQAA-AENFPFCTIDPNESRVPVPDERYDYLCEYHKPASK 322
+G++G PN GKST L ++ ++ F T++P +V + ++ E
Sbjct: 164 IGLLGFPNAGKSTLLKALVPEKSVKIADYAFTTVNP---QVAFFKNKEEFSVE------- 213
Query: 323 VPAF-LNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNL--CRAFDDEDVIHVDGDVN 493
P+F L++ D+ G++ GA+ +G G FL H++ D + + C+ F ++ + N
Sbjct: 214 DPSFTLSIADLPGIIEGASMNRGKGYKFLKHLEYADIVVMVVDCQGFQLKNELDCPFR-N 272
Query: 494 PVRDLETIAEELRLKDEE 547
P+ + + E+ L +++
Sbjct: 273 PLESIALLNREVELYNQK 290
>Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical
protein M01E5.2 protein.
Length = 358
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/96 (28%), Positives = 50/96 (52%)
Frame = +2
Query: 149 GIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRVPVPDERYDYLCEYHKPASKVP 328
G+VG PN GKS+ +++++ ++PF T+ P+ V D ++ +
Sbjct: 192 GLVGFPNAGKSSLLRAISRAKPKVASYPFTTLHPHIGVVFYED--FEQIA---------- 239
Query: 329 AFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIF 436
V DI GL+ + +GLG +FL HI+ C++++
Sbjct: 240 ----VADIPGLIEDSHLNKGLGISFLKHIERCESLW 271
>L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical
protein C02F5.3 protein.
Length = 366
Score = 40.7 bits (91), Expect = 0.001
Identities = 28/103 (27%), Positives = 51/103 (49%)
Frame = +2
Query: 143 KVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRVPVPDERYDYLCEYHKPASK 322
+V +VG P+VGKST + +T + + A + F T+ +P + Y+
Sbjct: 64 RVAMVGFPSVGKSTLLSSMTSTHSEAAGYEFTTL------TCIPG-----VISYN----- 107
Query: 323 VPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNLCRA 451
A + ++D+ G++ GA++G+G G +S K D I + A
Sbjct: 108 -GANIQLLDLPGIIEGASQGKGRGRQVISVAKTADLILMMLDA 149
>Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 36.3 bits (80), Expect = 0.027
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 128 VGTNLKVGIVGVPNVGKSTFFNVLTKSQAA-AENFPFCTIDPNE 256
+ T+++VG+VG PNVGKS+ N L + +A N P T + E
Sbjct: 256 IKTSIRVGVVGFPNVGKSSVINSLKRRKACNVGNLPGITKEIQE 299
>AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical
protein T07A9.9b protein.
Length = 633
Score = 31.5 bits (68), Expect = 0.78
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 152 IVGVPNVGKSTFFNVLTKSQAAAENFPFCT 241
+ G PNVGKS+F N +T++ + + F T
Sbjct: 174 LCGFPNVGKSSFINNVTRADVEVQPYAFTT 203
>AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical
protein T07A9.9a protein.
Length = 681
Score = 31.5 bits (68), Expect = 0.78
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 152 IVGVPNVGKSTFFNVLTKSQAAAENFPFCT 241
+ G PNVGKS+F N +T++ + + F T
Sbjct: 174 LCGFPNVGKSSFINNVTRADVEVQPYAFTT 203
>AL021571-4|CAI79270.1| 610|Caenorhabditis elegans Hypothetical
protein T19A6.2c protein.
Length = 610
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 140 LKVGIVGVPNVGKSTFFNVLTKSQ 211
+ VG +G PNVGKS+ N L K +
Sbjct: 326 ISVGFIGYPNVGKSSLVNTLRKKK 349
>AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical
protein T19A6.2b protein.
Length = 592
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 140 LKVGIVGVPNVGKSTFFNVLTKSQ 211
+ VG +G PNVGKS+ N L K +
Sbjct: 267 ISVGFIGYPNVGKSSLVNTLRKKK 290
>AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical
protein T19A6.2a protein.
Length = 651
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 140 LKVGIVGVPNVGKSTFFNVLTKSQ 211
+ VG +G PNVGKS+ N L K +
Sbjct: 326 ISVGFIGYPNVGKSSLVNTLRKKK 349
>AC024818-1|AAK29945.2| 375|Caenorhabditis elegans Hypothetical
protein Y54H5A.2 protein.
Length = 375
Score = 30.3 bits (65), Expect = 1.8
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 7/136 (5%)
Frame = +2
Query: 275 DERYDYLCEYHKPASKVPAFLNVVDIAGL-VRGAAEGQGLGNAFLSHIKACDAIFNLCRA 451
D +YLC P V L+ +IA L VR + ++ + K +A+F LC
Sbjct: 235 DTSDEYLCSILAPLMDVNDNLDEEEIAKLPVRLQYYEKERDSSDIVRQKLIEALFQLCAT 294
Query: 452 FDDEDVIHVDGDVNPVRDLETIAEELRLKDEEQLLQHIEK------LDRVVNRGGEKKLK 613
+V+ G +R+L+ E K ++ LL ++ + ++ E +
Sbjct: 295 KHGREVLRAKGVYPAMRELDKGTETAEDKHKKTLLSSQQEHTLHALIGILIRYESEMDVD 354
Query: 614 PEYDSLAKVKTILVDE 661
PE S+ ++ T V E
Sbjct: 355 PELSSIRELGTSEVTE 370
>U41105-15|AAT81191.1| 298|Caenorhabditis elegans Hypothetical
protein T02G5.13b protein.
Length = 298
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 122 GRVGTNLKVGIVGVPNVGKSTFFNVL--TKSQAAAENFPFCTIDPNES 259
GR +VGI G P VGKS+F L ++ + TIDP +
Sbjct: 18 GRDSMIFRVGISGSPGVGKSSFIEALGAELTENRGKKVAVLTIDPTSA 65
>U41105-14|AAA82408.2| 399|Caenorhabditis elegans Hypothetical
protein T02G5.13a protein.
Length = 399
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 122 GRVGTNLKVGIVGVPNVGKSTFFNVL--TKSQAAAENFPFCTIDPNES 259
GR +VGI G P VGKS+F L ++ + TIDP +
Sbjct: 119 GRDSMIFRVGISGSPGVGKSSFIEALGAELTENRGKKVAVLTIDPTSA 166
>Z93393-17|CAB07693.2| 751|Caenorhabditis elegans Hypothetical
protein Y48E1B.7 protein.
Length = 751
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 530 RLKDEEQLLQHIEKLDRVVNRGGEKKLKPEYDSLAKVKTILVDEKK 667
RL ++++ I+ D + N KLK Y+ LAK++ L++ ++
Sbjct: 568 RLSSSNEVIKQIDYRDLIPNESTLLKLKKAYNYLAKIENELLNPRR 613
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +2
Query: 473 HVDGDVNPVRDLETIAEELRLKDE----EQLLQHIEKLDRVVNRGGEK-KLKPEYDS 628
HV+ D PV + E + EEL +++E EQ + E + V R G K KP++DS
Sbjct: 696 HVEEDYLPVEE-ELVEEELVVEEEALPVEQHQEEEEDGEPTVTRAGRVVKKKPQFDS 751
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 183 HSSMFLPRVKQQLKTFLSAPSTLMRVGYLYL---MKGMTTYANIINQQAKCQLSSTW 344
H +MF + ++ ++ P L V L L + GMT + + INQ+A +S W
Sbjct: 1102 HPAMFYDKDAEEHIEYVDEPDRLSAVKALLLTRDLNGMTPFQSAINQRAYGAATSIW 1158
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
F36A2.13 protein.
Length = 2944
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 183 HSSMFLPRVKQQLKTFLSAPSTLMRVGYLYL---MKGMTTYANIINQQAKCQLSSTW 344
H +MF + ++ ++ P L V L L + GMT + + INQ+A +S W
Sbjct: 1102 HPAMFYDKDAEEHIEYVDEPDRLSAVKALLLTRDLNGMTPFQSAINQRAYGAATSIW 1158
>Z99281-8|CAB16514.1| 185|Caenorhabditis elegans Hypothetical
protein Y57G11C.13 protein.
Length = 185
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 140 LKVGIVGVPNVGKSTFFNVLTKSQAAAENFP 232
+++ +VG+ N GK+TF NV+ Q + P
Sbjct: 21 MELTLVGLQNSGKTTFVNVIASGQFTEDMIP 51
>AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical
protein Y67D2.4 protein.
Length = 313
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 128 VGTNLKVGIVGVPNVGKSTFFNVL 199
V T + +VG+PNVGKS+ N +
Sbjct: 112 VKTEYQAMVVGIPNVGKSSLINAI 135
>AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical
protein ZK105.3 protein.
Length = 802
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -3
Query: 830 RFCRSTLELWXXLFFFXX*SFSDKXTR---YRAGFEVRNRY 717
R+C S L++W + F +++DK Y GF VR Y
Sbjct: 762 RYCASILQIWSDIIFGGSRNYTDKSDEEIDYINGFPVRQLY 802
>AB185209-1|BAD30093.1| 185|Caenorhabditis elegans novel small G
protein indispensablefor equal chromosome segregation
protein.
Length = 185
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 140 LKVGIVGVPNVGKSTFFNVLTKSQAAAENFP 232
+++ +VG+ N GK+TF NV+ Q + P
Sbjct: 21 MELTLVGLQNSGKTTFVNVIASGQFTEDMIP 51
>Z22181-6|CAA80185.1| 178|Caenorhabditis elegans Hypothetical
protein ZK632.8 protein.
Length = 178
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 128 VGTNLKVGIVGVPNVGKST-FFNVLTKSQ 211
+G K+ +VG+ N GK+T +N +TK Q
Sbjct: 14 IGKKYKIIVVGLDNAGKTTILYNYVTKDQ 42
>Z93393-2|CAB07689.2| 890|Caenorhabditis elegans Hypothetical
protein Y48E1B.2a protein.
Length = 890
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
Frame = +2
Query: 134 TNLKVG------IVGVPNVGKSTFFNVLTKS 208
TN+K+G +VG N GKST FN L +S
Sbjct: 497 TNVKLGMRGDIFLVGCTNAGKSTMFNALLQS 527
>Z47075-7|CAA87384.1| 394|Caenorhabditis elegans Hypothetical
protein E02H1.2 protein.
Length = 394
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 140 LKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNES 259
L++ ++G PNVGKS N L + +A + T N S
Sbjct: 34 LQLAVIGAPNVGKSLLTNSLIRCPLSAVSSKMDTTTRNIS 73
>Z36752-8|CAA85330.1| 394|Caenorhabditis elegans Hypothetical
protein E02H1.2 protein.
Length = 394
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 140 LKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNES 259
L++ ++G PNVGKS N L + +A + T N S
Sbjct: 34 LQLAVIGAPNVGKSLLTNSLIRCPLSAVSSKMDTTTRNIS 73
>U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical
protein B0207.6 protein.
Length = 268
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 152 IVGVPNVGKSTFFNVLTKSQAAAENFPFCTI--DP-NESRVPVPD 277
++G P GKSTF LT + + PF TI DP N++ PD
Sbjct: 6 VIGAPGAGKSTFCAGLTDIFSQTKR-PFLTINLDPANDTMAYAPD 49
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 455 DDEDVIHVDGDVNPVRDLETIAEELRLKDEEQLLQHIEKLDRVVNRGGEKKLKPE 619
DD+ V+ DGD P D + E L D++ ++ IE ++ NR E+ L E
Sbjct: 1804 DDDVVVLSDGDDEPANDND--EESLNDIDDDDGIEEIEMVEESNNRDIEEVLGGE 1856
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 455 DDEDVIHVDGDVNPVRDLETIAEELRLKDEEQLLQHIEKLDRVVNRGGEKKLKPE 619
DD+ V+ DGD P D + E L D++ ++ IE ++ NR E+ L E
Sbjct: 1809 DDDVVVLSDGDDEPANDND--EESLNDIDDDDGIEEIEMVEESNNRDIEEVLGGE 1861
>AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical
protein C53H9.2c protein.
Length = 247
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 146 VGIVGVPNVGKSTFFNVL 199
VG+VG PNVGKS+ N L
Sbjct: 132 VGMVGYPNVGKSSTINKL 149
>AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical
protein C53H9.2b protein.
Length = 385
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 146 VGIVGVPNVGKSTFFNVL 199
VG+VG PNVGKS+ N L
Sbjct: 132 VGMVGYPNVGKSSTINKL 149
>AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical
protein C53H9.2a protein.
Length = 554
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 146 VGIVGVPNVGKSTFFNVL 199
VG+VG PNVGKS+ N L
Sbjct: 301 VGMVGYPNVGKSSTINKL 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,446,556
Number of Sequences: 27780
Number of extensions: 315417
Number of successful extensions: 1240
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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