Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I04
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    27   4.3  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    26   7.6  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   7.6  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.6  

>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -2

Query: 212 SLMMTLMVVSSIAYTLERSVHHPGYKMKNIAKTQQFTRKISITHRKIMYV 63
           SL+  ++V+SS AY L   V+H  +   N   +        +    +MY+
Sbjct: 478 SLLSRVLVISSTAYFLIMFVYHSSWVTSNAYSSPTVVLSTVLNDGSLMYI 527


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 564 EFDTTHRDTILSSPRH*FAHQFRDSGSRKSSRNPQPTVIEPPPPLHQ 704
           ++ TT RD      R   +   + SG  KS   P P+ I P  PLH+
Sbjct: 441 KWSTTRRDKGREMHR---SQVIQTSGRPKSMAPPSPSPISPSFPLHE 484


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 529 NNLAASSLTVHSSSILPTVTPFSAALGTNSLTN 627
           +++AAS   V SSS+  +VTP S++   +S T+
Sbjct: 87  SSVAASVTPVASSSVAASVTPVSSSAVVDSATS 119


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 547 SLTVHSSSILPTVTPFSAALGTNSLTNFGIPGLGNPQEILNLPSLSLRRPFISPSN 714
           S++   +S  PTV PFS+   T S      P L + ++  N  S+ + +  +SPSN
Sbjct: 11  SISPSIASSFPTVKPFSSQNSTTS-----NPELSHIEKESNASSIIISQQPLSPSN 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,702
Number of Sequences: 5004
Number of extensions: 68436
Number of successful extensions: 256
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)