Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I04
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0197 + 1554449-1555101,1555462-1555558 42 5e-04
11_06_0418 - 23317077-23317343,23317614-23317787,23317886-233179... 34 0.16
04_04_0979 - 29862280-29862444,29862718-29862999,29863831-298639... 34 0.16
03_01_0160 + 1302366-1302731,1303318-1303364,1303455-1303800 31 1.1
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146... 30 2.6
05_04_0135 + 18322962-18323136,18323182-18323237,18323749-183238... 29 3.5
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 29 4.6
09_02_0573 - 10804171-10805096,10805188-10805377,10805920-108063... 28 8.0
03_06_0495 + 34323082-34323173,34323600-34323742,34324265-343243... 28 8.0
>11_01_0197 + 1554449-1555101,1555462-1555558
Length = 249
Score = 42.3 bits (95), Expect = 5e-04
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +1
Query: 202 IIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMML 369
+++L+ LP+SA DI FF + E VHI G G+AF+ F T E A+ AM
Sbjct: 151 VLKLRGLPYSATTEDIIKFFVEYELTEENVHIAYRPDGKATGEAFVEFPTAEVAKTAMCK 210
Query: 370 D 372
D
Sbjct: 211 D 211
Score = 35.9 bits (79), Expect = 0.040
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +1
Query: 205 IRLQNLPWSANALDIRNFFRGLSIPEG-GVHIVGGELGDAFIAFSTDEDARQAMMLDGGK 381
+RL+ LP+ + LDI FF GL I + VH G G+AF+ F + A A+ +
Sbjct: 35 VRLRGLPFDCDDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 94
Query: 382 IKEIQVKLLLSSRSEMHKVI 441
+ V++ + E + I
Sbjct: 95 MGRRYVEVFRCKKQEYYSAI 114
>11_06_0418 -
23317077-23317343,23317614-23317787,23317886-23317971,
23318125-23318244,23318338-23318368,23318457-23318532,
23318672-23318759,23318877-23318938,23319041-23319117,
23319890-23319992,23320237-23320298,23321116-23321289,
23322160-23322405
Length = 521
Score = 33.9 bits (74), Expect = 0.16
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +1
Query: 181 EETTMSVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGGELGDAFIAFSTDEDARQA 360
E + + NLP N+ D+ FF L + V + G F+ +ST E+A A
Sbjct: 359 ENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKGFGFVRYSTHEEAALA 418
Query: 361 MMLDGGKI 384
+ G++
Sbjct: 419 IQTGNGQL 426
>04_04_0979 -
29862280-29862444,29862718-29862999,29863831-29863929,
29864037-29864366
Length = 291
Score = 33.9 bits (74), Expect = 0.16
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +1
Query: 211 LQNLPWSANALDIRNFFRGLSIPEGGVHI---VGGELGDAFIAFSTDEDARQAMM-LDGG 378
+ NLPW A A +++ FF + V G G F++F T E+A A+ LDG
Sbjct: 178 VSNLPWKARAPNMKEFFSKFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGK 237
Query: 379 KIKEIQVKL 405
++ V+L
Sbjct: 238 ELMGRPVRL 246
>03_01_0160 + 1302366-1302731,1303318-1303364,1303455-1303800
Length = 252
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +1
Query: 217 NLPWSANALDIRNFFRGLSIPEGGVHI---VGGELGDAFIAFSTDEDARQAMMLDGGKIK 387
NL W D+R+FF+ L I I G G + F DE +A+ ++ +++
Sbjct: 179 NLKWDVTETDLRDFFKSLKISSIRFAINKRTGDSRGFCHVDFEDDESLEKAVGMNQSELR 238
Query: 388 EIQVKL 405
+K+
Sbjct: 239 GRPIKI 244
>02_01_0224 -
1461924-1462227,1462602-1462798,1463059-1463213,
1464101-1464207,1464289-1464375,1465332-1465414,
1465959-1466027,1466332-1466658,1466744-1466957,
1467170-1467267,1467516-1467554,1467672-1468160
Length = 722
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 618 AHQFRDSGSRKSSRNPQPTVIEPPPP 695
A FR +SRNP PT PPPP
Sbjct: 15 AELFRAQDEAVASRNPNPTPPPPPPP 40
>05_04_0135 +
18322962-18323136,18323182-18323237,18323749-18323885,
18324679-18324865,18324958-18325080,18325828-18326112
Length = 320
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Frame = +3
Query: 504 GSPDQRPTK--QFSCFL----FDCSLEFDTTH-----RDTILSSPRH*FAHQFRDSGSRK 650
G+PD + K +F F+ F C L +T H + S RH F H FR+S RK
Sbjct: 116 GTPDPKWAKKYEFQQFVTDPQFSCPLRLNTKHAPDKNQQQQNCSARHGFGHAFRNSWKRK 175
Query: 651 SSRN 662
+ N
Sbjct: 176 DTDN 179
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 603 PRH*FAHQFRDSGSRKSSRNPQPTVIEPPPPLHQSEQ 713
P H H+ R S+K PQP PP P Q +Q
Sbjct: 41 PHHHHHHRRRHRHSKKPKPQPQPQPPPPPLPPQQQQQ 77
>09_02_0573 -
10804171-10805096,10805188-10805377,10805920-10806363,
10806689-10807552,10809269-10809802
Length = 985
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 591 ILSSPRH*FAHQFRDSGSRKSSRNPQPTV 677
I SS R FA + ++ S++SSRNP P +
Sbjct: 456 IRSSLRTAFAQRMEEADSKRSSRNPTPVL 484
>03_06_0495 +
34323082-34323173,34323600-34323742,34324265-34324315,
34324405-34324626,34324731-34324833,34325156-34325552,
34326564-34326735,34326995-34327089,34327246-34327455
Length = 494
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 520 VPQNNLAASSLTVHSSSILPTVTPFSAALGTNSLT 624
+ QNN + L + S+ + P +T FS+ TNS T
Sbjct: 128 IVQNNPKSQQLVMESNGLEPLLTNFSSDASTNSRT 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,114,384
Number of Sequences: 37544
Number of extensions: 487319
Number of successful extensions: 1461
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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