Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I04
(834 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 101 6e-22
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 52 5e-07
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 52 5e-07
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 52 5e-07
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 49 4e-06
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 33 0.19
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 33 0.19
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr... 31 1.0
AL032648-6|CAC35867.1| 244|Caenorhabditis elegans Hypothetical ... 31 1.0
AF303259-1|AAG50217.1| 244|Caenorhabditis elegans 2O16 protein. 31 1.0
Z68131-2|CAA92218.1| 614|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41551-2|AAK71399.1| 184|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41551-1|AAK71398.1| 177|Caenorhabditis elegans Hypothetical pr... 29 3.1
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 29 5.4
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z48178-5|CAA88205.1| 413|Caenorhabditis elegans Hypothetical pr... 28 7.2
L23651-4|AAU87828.2| 294|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 9.5
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 28 9.5
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 101 bits (242), Expect = 6e-22
Identities = 48/89 (53%), Positives = 63/89 (70%)
Frame = +1
Query: 193 MSVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGGELGDAFIAFSTDEDARQAMMLD 372
MSVIIRL+NLP +A A D+R FF GL IP+G VHI+GG+ G+ F+ FS+D+DAR AM D
Sbjct: 1 MSVIIRLKNLPMTAGASDVRTFFTGLKIPDGAVHIIGGDEGEVFVGFSSDDDARLAMTKD 60
Query: 373 GGKIKEIQVKLLLSSRSEMHKVIETARQN 459
I +V+L LSS+SE + VI + N
Sbjct: 61 RLMIHGAEVRLFLSSKSEQNSVIAARKNN 89
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +1
Query: 196 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV---GGELGDAFIAFSTDEDARQAMM 366
++I+R++ LP+ IR FF L + + + I G GDAF+ F T+EDA+Q ++
Sbjct: 280 AIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLL 339
Query: 367 LDGGKIKEIQVKLLLSSRSEMHKVIE 444
I + ++L S+ +E+ +V++
Sbjct: 340 KHRQVIGQRYIELFKSTAAEVQQVVK 365
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +1
Query: 196 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAM 363
+V+ R + LPW A+ + FF GL I GG+ + G G+ + FS+ E A+
Sbjct: 180 NVVCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLAL 239
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +1
Query: 196 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV---GGELGDAFIAFSTDEDARQAMM 366
++I+R++ LP+ IR FF L + + + I G GDAF+ F T+EDA+Q ++
Sbjct: 280 AIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLL 339
Query: 367 LDGGKIKEIQVKLLLSSRSEMHKVIE 444
I + ++L S+ +E+ +V++
Sbjct: 340 KHRQVIGQRYIELFKSTAAEVQQVVK 365
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +1
Query: 196 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAM 363
+V+ R + LPW A+ + FF GL I GG+ + G G+ + FS+ E A+
Sbjct: 180 NVVCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLAL 239
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +1
Query: 196 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV---GGELGDAFIAFSTDEDARQAMM 366
++I+R++ LP+ IR FF L + + + I G GDAF+ F T+EDA+Q ++
Sbjct: 280 AIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLL 339
Query: 367 LDGGKIKEIQVKLLLSSRSEMHKVIE 444
I + ++L S+ +E+ +V++
Sbjct: 340 KHRQVIGQRYIELFKSTAAEVQQVVK 365
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +1
Query: 196 SVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAM 363
+V+ R + LPW A+ + FF GL I GG+ + G G+ + FS+ E A+
Sbjct: 180 NVVCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLAL 239
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 49.2 bits (112), Expect = 4e-06
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Frame = +1
Query: 202 IIRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGG-------ELGDAFIAFSTDEDARQA 360
+IRL+ +PWS D+R FF GL P + ++GG G+AF+ F+T + A +A
Sbjct: 158 VIRLRGVPWSCKEDDVRKFFEGLEPPPAEI-VIGGTGGPRSRPSGEAFVRFTTQDAAEKA 216
Query: 361 MMLDGGKIKEIQVKLLLSSRSEMHK 435
M + + V++ +SS E ++
Sbjct: 217 MDYNNRHMGSRYVEVFMSSMVEFNR 241
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +1
Query: 184 ETTMSVIIRLQNLPWSANALDIRNFFRGLSIPE-GGVHIVGGELGDAFIAFSTDEDARQA 360
E S IRL+ LP++A DI FF GL+I V G G+A++ F E+A +A
Sbjct: 59 EPPRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTTGRPNGEAYVEFKNTEEAGKA 118
Query: 361 MMLDGGKIKEIQVKLLLSSRSE 426
M D +I +++ E
Sbjct: 119 MENDRKEISNRYIEVFTVEADE 140
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 205 IRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGGEL-GDAFIAFSTDEDARQAMMLD 372
++ + LPW A ++R+FF I + G GDA + F+ +ED A+ D
Sbjct: 7 VQCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKD 63
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +1
Query: 202 IIRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGGEL----GDAFIAFSTDEDARQA 360
I+RL+ LP+S + DI +F L I G+ + + G+A++ F T E + A
Sbjct: 124 IVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIA 180
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 205 IRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGGEL-GDAFIAFSTDEDARQAMMLD 372
++ + LPW A ++R+FF I + G GDA + F+ +ED A+ D
Sbjct: 7 VQCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKD 63
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +1
Query: 202 IIRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGGEL----GDAFIAFSTDEDARQA 360
I+RL+ LP+S + DI +F L I G+ + + G+A++ F T E + A
Sbjct: 124 IVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIA 180
>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical protein
T01H10.8 protein.
Length = 2692
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 155 VHHPGYKMKNIAKTQQFTRKISITHRKIMYVYHSIFPGRH 36
VH G KN+ KT++F I ++HS+ P RH
Sbjct: 908 VHELGISSKNLEKTRKFVLSTKGRKLNIGQMFHSVIPIRH 947
>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical protein
T01H10.8 protein.
Length = 2692
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 155 VHHPGYKMKNIAKTQQFTRKISITHRKIMYVYHSIFPGRH 36
VH G KN+ KT++F I ++HS+ P RH
Sbjct: 908 VHELGISSKNLEKTRKFVLSTKGRKLNIGQMFHSVIPIRH 947
>AL032648-6|CAC35867.1| 244|Caenorhabditis elegans Hypothetical
protein Y54G9A.7 protein.
Length = 244
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 562 SSSILPTVTPFSAALGTNSLTNFGIPGLGNPQEILNLPSLSLRRPFISP 708
+SSILP + S + S+ +P L NPQ+I P+L R P ++P
Sbjct: 31 TSSILPPLVTPSTTIVEKSIE---LPSLENPQQIYTFPTLH-RSPIVAP 75
>AF303259-1|AAG50217.1| 244|Caenorhabditis elegans 2O16 protein.
Length = 244
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 562 SSSILPTVTPFSAALGTNSLTNFGIPGLGNPQEILNLPSLSLRRPFISP 708
+SSILP + S + S+ +P L NPQ+I P+L R P ++P
Sbjct: 31 TSSILPPLVTPSTTIVEKSIE---LPSLENPQQIYTFPTLH-RSPIVAP 75
>Z68131-2|CAA92218.1| 614|Caenorhabditis elegans Hypothetical
protein B0395.3 protein.
Length = 614
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -1
Query: 450 SGLYDFVHFRTGTK*KFHLDFFDFSTIEHHGLTRIFIGTESNESISQLASYDVYTPLG-Y 274
S +YD + T + K+ +D D + ++ H L I TE+N ++ ++Y L +
Sbjct: 476 SEIYDALVHATNSHKKYTMDCMDAAGMDRHLLAWKLIATENNLPTPEIFGSNIYQQLNHF 535
Query: 273 RKAPKEIP 250
+ + ++P
Sbjct: 536 QVSTSQVP 543
>U41551-2|AAK71399.1| 184|Caenorhabditis elegans Hypothetical
protein T06F4.1b protein.
Length = 184
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +3
Query: 492 YCFRGSPDQRPTKQFSCFLFDCSLEFDTTH--RDTILSSPRH*FAHQFRDSGSRKSSRNP 665
+CFR S +P +++ + + EF+ T D +L++ R + +S +N
Sbjct: 69 FCFRRSRRNQPRRRYGDYQLESQREFNNTQTTNDEMLTTVRSDANSSYMGRNHHRSHQNT 128
Query: 666 QPTVIEPPPPLHQ 704
PT + HQ
Sbjct: 129 APTFMRHGHMNHQ 141
>U41551-1|AAK71398.1| 177|Caenorhabditis elegans Hypothetical
protein T06F4.1a protein.
Length = 177
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +3
Query: 492 YCFRGSPDQRPTKQFSCFLFDCSLEFDTTH--RDTILSSPRH*FAHQFRDSGSRKSSRNP 665
+CFR S +P +++ + + EF+ T D +L++ R + +S +N
Sbjct: 62 FCFRRSRRNQPRRRYGDYQLESQREFNNTQTTNDEMLTTVRSDANSSYMGRNHHRSHQNT 121
Query: 666 QPTVIEPPPPLHQ 704
PT + HQ
Sbjct: 122 APTFMRHGHMNHQ 134
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex
protein protein7 protein.
Length = 1217
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 535 LAASSLTVHSSSILPTVTPFSAALGTNSLTNFGIPGL-GNPQEILNLPSLSLRRPFISPS 711
L +S+ + S S +PT+ P + G +S +FG + GN + LP +S F +P+
Sbjct: 864 LPSSTDSTQSKSAIPTIAPTMSLFGNSSTGSFGGSSMFGNSK--TELPKISSTLSFGNPT 921
>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
protein F07A11.4 protein.
Length = 1095
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 573 TTHRDTILSSPRH*FAHQFRDSGSRKSSRNPQPTVIEPPPP 695
+T T+L + R + + G SS PQP + PPPP
Sbjct: 325 STSTSTLLRTRRERLERE--EEGRNSSSMTPQPQSLVPPPP 363
>Z48178-5|CAA88205.1| 413|Caenorhabditis elegans Hypothetical
protein C05C10.4 protein.
Length = 413
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 378 KNQRNPSETFT*FP-FGNAQSHRDRSSECSSPQSCDCSTY 494
KN P T FP F H D +C++ Q+C C+ Y
Sbjct: 127 KNVDYPYSPLTWFPGFTFVPVHVDGPDQCAASQNCPCTRY 166
>L23651-4|AAU87828.2| 294|Caenorhabditis elegans Hypothetical
protein C29E4.13 protein.
Length = 294
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 288 CTHRRRRAGRCFHCFQYR*RCASSHDARWWKNQRNPSETFT*F 416
CTH + R RCFHC + + + R+ + R+P + T F
Sbjct: 137 CTHLKYRPYRCFHC--KKDGFYTEEEGRFHLSTRHPKDEVTLF 177
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 689 RRLNDGRLRIS*GFPRPGIPKLVSELVPRAAEN 591
+ LN G LR+ G P IPK S P AEN
Sbjct: 1306 QHLNVGHLRVPFGPVTPKIPKAFSLKAPTCAEN 1338
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 220 LPWSANALDIRNFFRGLSIPEGGVHIVG--GELGDAFIAFSTDEDARQAMMLDGG 378
LP + N D++N FR S +H G AFI F T EDA+ A G
Sbjct: 645 LPGTCNNTDLKNIFRS-STDIKILHASGQPNSKKRAFITFGTVEDAQAAFAKSNG 698
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,367,243
Number of Sequences: 27780
Number of extensions: 404218
Number of successful extensions: 1272
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -