Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I04
(834 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein... 57 2e-08
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 55 5e-08
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 31 0.71
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 31 1.2
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 30 1.6
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa... 30 2.2
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 29 2.9
At3g11890.2 68416.m01458 expressed protein 29 3.8
At3g11890.1 68416.m01457 expressed protein 29 3.8
At1g20530.1 68414.m02558 hypothetical protein 29 5.0
At5g24340.1 68418.m02868 3'-5' exonuclease domain-containing pro... 28 6.6
At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putativ... 28 6.6
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 28 6.6
At5g08400.1 68418.m00989 expressed protein predicted proteins, A... 28 8.8
At3g16230.1 68416.m02048 expressed protein similar to ASC-1 comp... 28 8.8
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 28 8.8
>At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to SP|P52597
Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
{Homo sapiens}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 350
Score = 56.8 bits (131), Expect = 2e-08
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Frame = +1
Query: 160 RSSV*AIEETTMSVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHI-VGGE---LGDAFI 327
RSS E+ + I+RL+ LP+SA DI +FF+ + E VH+ V GE G+AF+
Sbjct: 249 RSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFV 308
Query: 328 AFSTDEDARQAMMLDGGKIKEIQVKLLLSSRSEMHKVIETAR 453
F ED+R AM+ D + ++L SS E+ + + R
Sbjct: 309 EFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 350
Score = 31.9 bits (69), Expect = 0.54
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 205 IRLQNLPWSANALDIRNFFRGLSIPEG-GVHIVGGELGDAFIAFSTDEDARQAMMLDGGK 381
+RL+ LP+ LD+ FF GL + + VH G+AF A+ +
Sbjct: 117 VRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQN 176
Query: 382 IKEIQVKLLLSSRSEMHKVI 441
+ V++ S++ E +K I
Sbjct: 177 MGRRYVEVFRSTKQEYYKAI 196
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 55.2 bits (127), Expect = 5e-08
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Frame = +1
Query: 181 EETTMSVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV----GGELGDAFIAFSTDED 348
E+ + +++++ LP+S N I FF G + +G V +V G G+AF+ F T E+
Sbjct: 194 EKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEE 253
Query: 349 ARQAMMLDGGKIKEIQVKLLLSSRSEMHKVIETARQ 456
AR+AM D I V+L ++R E + +RQ
Sbjct: 254 ARRAMAKDKMSIGSRYVELFPTTREEARRAEARSRQ 289
Score = 35.9 bits (79), Expect = 0.033
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 202 IIRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGGEL-GDAFIAFSTDEDARQAMMLDGG 378
++RL+ LP++ +DI FF GL+I + + G+ G+AF+ F+ A+ D
Sbjct: 84 VVRLRGLPFNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRH 143
Query: 379 KIKEIQVKLLLSSRSEMHKVI 441
+ V++ S+ + + +
Sbjct: 144 NMGRRYVEVFRCSKQDYYNAV 164
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 31.5 bits (68), Expect = 0.71
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 289 VHIVGGELGDAFIAFSTDEDARQAMM-LDGGKIKEIQVKLLLSSRSEMHKV 438
VH G G F+ FST E+A +AM+ ++G + + + L+ E HK+
Sbjct: 256 VHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKL 306
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Frame = +1
Query: 166 SV*AIEETTMSVIIRLQNLPWSANALDIRNFFRGLSIPEGGVHIVGGE----------LG 315
SV E T + +N+P SA+ + F G + G HI G E
Sbjct: 867 SVQLTESTRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKS 926
Query: 316 DAFIAFSTDEDARQAMMLDG 375
A + F T +DA A+ LDG
Sbjct: 927 QALVEFLTPQDASAALSLDG 946
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 301 GGELGDAFIAFSTDEDARQAM-MLDGGKIKEIQVKLLLSSRSEMHKV 438
G G F+AF+T E+A +AM L G I+ + + ++ R E +V
Sbjct: 169 GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRV 215
>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 997
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +1
Query: 538 AASSLTVHSS---SILPTVTPFSAALGTNSLTNFGIPGLGNPQEILNLPSLSLRRPFISP 708
++SSLT S I P VTPF +A T L FG G Q I N ++ S
Sbjct: 578 SSSSLTTSISPFGQITPAVTPFQSAQPTQPLGAFGFNNFGQTQ-IANTTDIAGAMGTFSQ 636
Query: 709 SNXK 720
N K
Sbjct: 637 GNFK 640
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 178 IEETTMSVIIRLQNLPWSANALDIRNFFR--GLSIP-EGGVHIVGGELGDAFIAFSTDED 348
+EE + QN+PW++ DIR+ F G I E +H G FI ++ E+
Sbjct: 87 VEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEE 146
Query: 349 ARQAM 363
A A+
Sbjct: 147 AATAL 151
>At3g11890.2 68416.m01458 expressed protein
Length = 527
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -3
Query: 175 PIH*SVVSTIPVTK*KTLQKHNSSQEKYQ 89
P+H +VV ++PVT+ TLQK SSQ + +
Sbjct: 151 PLH-TVVHSLPVTEHSTLQKPTSSQSQVE 178
>At3g11890.1 68416.m01457 expressed protein
Length = 500
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -3
Query: 175 PIH*SVVSTIPVTK*KTLQKHNSSQEKYQ 89
P+H +VV ++PVT+ TLQK SSQ + +
Sbjct: 151 PLH-TVVHSLPVTEHSTLQKPTSSQSQVE 178
>At1g20530.1 68414.m02558 hypothetical protein
Length = 614
Score = 28.7 bits (61), Expect = 5.0
Identities = 29/90 (32%), Positives = 39/90 (43%)
Frame = +3
Query: 426 NAQSHRDRSSECSSPQSCDCSTYCFRGSPDQRPTKQFSCFLFDCSLEFDTTHRDTILSSP 605
+ +S D S E SP+SC S + S P K F DC E + T+ D +LS
Sbjct: 65 DVESEADESPETYSPESCS-SAHSVTSSDSDLPPK----FDSDCE-EGEGTNCD-LLSGS 117
Query: 606 RH*FAHQFRDSGSRKSSRNPQPTVIEPPPP 695
+ + D S S R T+ PPPP
Sbjct: 118 KPESLNLNHD--SFYSRRYESGTITPPPPP 145
>At5g24340.1 68418.m02868 3'-5' exonuclease domain-containing
protein contains Pfam profile PF01612: 3'-5' exonuclease
Length = 505
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -1
Query: 378 STIEHHGLTRIFIGTESNESISQLASYDVYTPLGYRKAPKEIPNIQSVCR 229
ST HG F + I+ + +Y + G RKAPK+I ++ ++C+
Sbjct: 110 STFTQHGCEGGFQEVKQYLDITSIYNYLQHKRFG-RKAPKDIKSLAAICK 158
>At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putative /
O-acetylserine (thiol)-lyase, putative / O-acetylserine
sulfhydrylase, putative identical to SP|O22682 Probable
cysteine synthase, chloroplast precursor {Arabidopsis
thaliana}, similar to SP|P31300 Cysteine synthase,
chloroplast precursor {Capsicum annuum}
Length = 404
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 587 HHSQQPSALIRSPISGFRV*EILKKSST 670
HH S +R+P+S F V I KSST
Sbjct: 37 HHDSSSSLAVRTPVSSFVVGAISGKSST 64
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 301 GGELGDAFIAFSTDEDARQAMMLDG 375
G G AF+ F++ E+A AM LDG
Sbjct: 72 GRSRGFAFVTFTSTEEASNAMQLDG 96
>At5g08400.1 68418.m00989 expressed protein predicted proteins,
Arabidopsis thaliana and Synechocystis sp.
Length = 333
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 501 GNSRCCSRKTEERNILTSGLYDFVHFRTGTK*KFHLDFFDFSTIEHHGLTRIFIGTESNE 322
GN +K EER + G DF +TG+ F ++F DF+ ++ ++ GT S+
Sbjct: 152 GNPELMRKKVEER-VRKKGK-DFQKQKTGSVLSFKVNFRDFNPVDSFIWFELY-GTPSDR 208
Query: 321 SISQLAS 301
+ + S
Sbjct: 209 DVDLIGS 215
>At3g16230.1 68416.m02048 expressed protein similar to ASC-1 complex
subunit P50 (GI:12061189) [Homo sapiens]
Length = 449
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 271 SIPEGGVHIVGGELGDAFIAFSTDEDARQAMMLDGGKIKEIQVKLLL-SSRSEMHKVIE 444
S+ G H V E+G + I F ++ M L+ +E+ VK++L SSR++ H IE
Sbjct: 95 SVVSAGKHSVSLEVGASLIKFIRGKEGTTQMKLE----EEMGVKIILPSSRNKDHISIE 149
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = -1
Query: 255 IPNIQSVCRPRQVL*SYDDTHGCFFYCLYTRA*CPPSRLQNEKHCKNTTVHKKNI 91
+P+ Q C Q + DTHGC F CPP EK C V +NI
Sbjct: 655 VPSCQLPCPIPQPC-GHSDTHGCHF------GDCPPCSTPVEKKCVGGHVVLRNI 702
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,430,194
Number of Sequences: 28952
Number of extensions: 378286
Number of successful extensions: 1221
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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