Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I03
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 227 2e-60
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 202 6e-53
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 98 1e-21
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 30 0.47
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.9
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 27 2.5
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 3.3
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 4.4
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 5.8
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 227 bits (555), Expect = 2e-60
Identities = 112/152 (73%), Positives = 133/152 (87%)
Frame = +2
Query: 161 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 340
P+Y PFFGVMG +AI+F++ GAAYGTAK+G GI+AM V+RP+LI+K+ IPVVMAGIIAI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66
Query: 341 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGYAIGIVGDAGVRGTAQQP 520
YGLVV+VLI+G L++ + LY GFI LGAGL+VG +GLAAG+AIGIVGDAGVRGTAQQP
Sbjct: 67 YGLVVSVLISGNLKQILS--LYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQP 124
Query: 521 RLFVGMILILIFAEVLGLYGLIVAIYLYTK*T 616
RLFV MILILIFAEVLGLYGLIVA+ L T+ T
Sbjct: 125 RLFVAMILILIFAEVLGLYGLIVALLLNTRAT 156
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 202 bits (492), Expect = 6e-53
Identities = 94/150 (62%), Positives = 118/150 (78%)
Frame = +2
Query: 161 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 340
PIY FFG G ++++FS LGA YGTA +G GIAA+ RPE++MKS+IPVVM+GII +
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 341 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGYAIGIVGDAGVRGTAQQP 520
YGLV++VLIAG + +Y L+ GFIHL AGLAVG +G+AAGYAIG+VGD GV+ +Q
Sbjct: 67 YGLVMSVLIAGDMSPDNDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQD 126
Query: 521 RLFVGMILILIFAEVLGLYGLIVAIYLYTK 610
R+FV M+LILIFAEVLGLYGLIV + L TK
Sbjct: 127 RIFVSMVLILIFAEVLGLYGLIVGLILQTK 156
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 398 PLYKGFIHL-GAGLAVGFSGLAAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGL 574
P+Y F G ++ FS L AGY + G A +P + + ++ ++ + ++G+
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 575 YGLIVAIYLYTK*TPLNTH 631
YGL++++ + +P N +
Sbjct: 67 YGLVMSVLIAGDMSPDNDY 85
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 98.3 bits (234), Expect = 1e-21
Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 6/147 (4%)
Frame = +2
Query: 179 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 358
+G++G AS + F +GAA+G GT I +V P + K++I ++ ++AIY L++A
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104
Query: 359 VLIAGALQE--PANY----PLYKGFIHLGAGLAVGFSGLAAGYAIGIVGDAGVRGTAQQP 520
++ + + + PA + Y GF G+ VG L G +GI G + AQ
Sbjct: 105 IVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGITGSSAALADAQDA 164
Query: 521 RLFVGMILILIFAEVLGLYGLIVAIYL 601
LFV ++++ IF VLGL+GLIV + +
Sbjct: 165 SLFVKVLVVEIFGSVLGLFGLIVGLLI 191
Score = 42.7 bits (96), Expect = 6e-05
Identities = 22/68 (32%), Positives = 35/68 (51%)
Frame = +2
Query: 422 LGAGLAVGFSGLAAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 601
LG V F + A + I I G + + G + PR+ ++ +IF EV+ +Y LI+AI
Sbjct: 48 LGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIAIVF 107
Query: 602 YTK*TPLN 625
K +N
Sbjct: 108 SAKINDIN 115
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 29.9 bits (64), Expect = 0.47
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 305 IIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGYAIGIV 484
II +AG+IA + +++ IAG + G ++ G L LA G+ I
Sbjct: 193 IITATIAGVIAAFSVIITATIAGVIAAMV------GILYFGHWLVYKILILAFGFKIVTS 246
Query: 485 GDAGVRGT 508
GD V T
Sbjct: 247 GDVCVSNT 254
>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 281
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -3
Query: 607 CVQVDGDD-KSV--KTQYFSENKNKNHSDE*PRLLSSTT 500
C++VD +D K + K+QY +EN N N + P L S+TT
Sbjct: 233 CIEVDSEDWKDLVWKSQYATENANTNSINNSP-LSSNTT 270
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.5 bits (58), Expect = 2.5
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +2
Query: 164 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 343
+YGPF+ A+ FS Y +G G + S+ K +I A II Y
Sbjct: 87 LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSI-------KKLISA--ASIIYGY 137
Query: 344 GLVVAVLIAGAL 379
++AVL+ G L
Sbjct: 138 TTIIAVLLWGIL 149
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 27.1 bits (57), Expect = 3.3
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +2
Query: 140 NKMAENNP---IYGPFFG-VMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR-PELIMKS 304
+K+A ++P I F+G ++G + F+ + + ++ G S LI+ S
Sbjct: 1424 DKIAMDSPRARITTMFYGEILGPLGTLFFTCIPFLFINSQPGNDDETQSTNAFIRLIIMS 1483
Query: 305 IIPVVMAGIIAIYGLVVAVLIAGALQEPA-NYPLY 406
+ P+V++ IIA + + +++ L + + Y +Y
Sbjct: 1484 VAPLVLSAIIAFFFFCLGIMLRPILGDRSKTYGVY 1518
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 119 TGPKNCDDYLHTLTPRNYFCTDK 51
TG KNCDD+L +P + D+
Sbjct: 402 TGNKNCDDHLRDKSPERRYRYDR 424
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 418 DEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRND 305
DEPF+K +L+ SN++S+ VD N+ D +D
Sbjct: 48 DEPFLKSKYMDILQKISNRESNVINVDLNDLYEFDPSD 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,930
Number of Sequences: 5004
Number of extensions: 70464
Number of successful extensions: 207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -