Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I03
(837 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.) 244 9e-65
SB_34973| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 30 2.7
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_21973| Best HMM Match : XPG_N (HMM E-Value=0.013) 29 4.7
SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069) 29 6.2
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 244 bits (596), Expect = 9e-65
Identities = 124/152 (81%), Positives = 136/152 (89%)
Frame = +2
Query: 155 NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 334
+ P Y FFGVMGA +A++FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII
Sbjct: 5 DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64
Query: 335 AIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGYAIGIVGDAGVRGTAQ 514
AIYGLVVAVLI ++ + +Y LYK F+ LGAGL+VG SGLAAG+AIGIVGDAGVRGTAQ
Sbjct: 65 AIYGLVVAVLIGSSISK--DYTLYKSFLDLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQ 122
Query: 515 QPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 610
QPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 123 QPRLFVGMILILIFAEVLGLYGLIVALILTTK 154
>SB_34973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 31.5 bits (68), Expect = 0.88
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Frame = +2
Query: 41 LGHICLCKSSFVE*VCADSHHSF--WDL*ILPHLTNKMAENNPIYGPFFGVMGAASAIIF 214
L H+ L KS + C DS HSF W +L + N P+ P A S +
Sbjct: 285 LNHLVLPKSRKKKISCVDSLHSFAQWQNVMLETIYTNQVLNFPLAEP------AVSGLYG 338
Query: 215 SALGAAYGTAKSGTGIAAMSVMRP--ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP 388
S + A T + G A S++ P + + ++ VM GI + L A + ++P
Sbjct: 339 SGVAALGITEQLQKGQEASSIVHPSDHDLYQRLMDAVMEGIHKVESLSSASKKESSKEKP 398
Query: 389 AN 394
N
Sbjct: 399 KN 400
>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 425 GAGLAVGFSGLAAGYAIGIVG 487
GAG+ VGF LA G +G+VG
Sbjct: 46 GAGMTVGFCNLACGICVGLVG 66
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 307 HSCRHGGYYCHLRSGRGCPDCWCPPGASQLPPLQRV 414
+ CR+ G C + R P C CPPG QRV
Sbjct: 2981 YKCRYQGEVC-VTDSRNVPRCVCPPGCPPAEVSQRV 3015
>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
Length = 439
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = -2
Query: 506 YHARLHLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPGGHQQSGQ--PRPDRRW 336
YHA+ + +C ++P +L Q S C PGGHQ Q R RW
Sbjct: 264 YHAKNQVVKCYQPGKEPGGHLLPTYQAKSQAVKCYYIPGKEPGGHQAKNQAVTRQRTRW 322
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 491 HLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPG-GHQQSGQ 357
++ +++ Q +Q +L NQ PS T+ GGS G GH GQ
Sbjct: 2347 YVSHTVFKREQDEQLLLWLNQRPSDWTMTWGGSGTIYGWGHNHRGQ 2392
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 307 HSCRHGGYYCHLRSGRGCPDCW 372
+SC G YYC++ RG DCW
Sbjct: 348 YSCNSGHYYCYV---RGSNDCW 366
>SB_21973| Best HMM Match : XPG_N (HMM E-Value=0.013)
Length = 611
Score = 29.1 bits (62), Expect = 4.7
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Frame = +2
Query: 41 LGHICLCKSSFVE*VCADSHHSF--WDL*ILPHLTNKMAENNPIYGPFFGVMGAASAIIF 214
L H+ L +S + C DS HSF W +L + N P+ P A S +
Sbjct: 469 LNHLVLPESREKKISCVDSLHSFAQWQNVMLETIYTNQVLNFPLAEP------AVSGLYG 522
Query: 215 SALGAAYGTAKSGTGIAAMSVMRP--ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP 388
S + A T + G A S++ P + + + VM GI + L A + ++P
Sbjct: 523 SGVAALGITEQLQKGQKASSIVHPLDHDLYQRLRDAVMEGICKVESLSSASKKESSKEKP 582
Query: 389 AN 394
N
Sbjct: 583 KN 584
>SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069)
Length = 466
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/28 (60%), Positives = 18/28 (64%)
Frame = +3
Query: 159 IQSTDPSLELWGRRLLSSSAPWELPMEL 242
I S D LELWG R LS+SA LP EL
Sbjct: 355 ILSGDFYLELWGARELSNSALNFLPAEL 382
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 472 GVTGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 341
G +T SYS S+QV +PF V +QD H+QT+
Sbjct: 713 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQPIKQHQDKHNQTL 756
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,278,894
Number of Sequences: 59808
Number of extensions: 585508
Number of successful extensions: 1582
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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