Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I03
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   287   7e-80
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   8.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   8.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.1  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  287 bits (705), Expect = 7e-80
 Identities = 142/153 (92%), Positives = 148/153 (96%)
 Frame = +2

Query: 152 ENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 331
           E++PIY PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI
Sbjct: 4   EDHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 63

Query: 332 IAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGYAIGIVGDAGVRGTA 511
           IAIYGLVVAVLIAG L+EP  Y L+KGF+HLGAGLAVGFSGLAAG+AIGIVGDAGVRGTA
Sbjct: 64  IAIYGLVVAVLIAGGLEEPKGYTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 123

Query: 512 QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 610
           QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK
Sbjct: 124 QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 156


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 367 NQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHRH 269
           NQ  H    D  N  ++  ND+ H   + ++RH
Sbjct: 430 NQARHSSKSDNQN--NNQHNDQAHHSSKSNNRH 460


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 150 LKIIQSTDPSLELWGRRLLSSS 215
           + I + TDP  E W RR L  S
Sbjct: 142 MTITELTDPVKEFWERRALQIS 163


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 524 LFVGMI-LILIFAEVLGLYGLIVAIY 598
           L VG + LILIF  V G   + VAIY
Sbjct: 26  LLVGFLFLILIFLSVAGNILVCVAIY 51


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 317 VMAGIIAIYGLVVAVLIAGALQEPANY 397
           +++G+I   GL++ VLI G++ E   +
Sbjct: 413 IVSGLIT--GLIMRVLICGSISEEQKF 437


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 290 LIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPL 403
           L++ SII   + G I +    VAV +   L+ P NY L
Sbjct: 46  LVLGSIIVGTVIGNILV---CVAVFLVRKLRRPCNYLL 80


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 607 CVQVDGDDKSVKTQYFSENKNKNHSD 530
           C+  D   +S+ TQ+    +++ HSD
Sbjct: 328 CLDCDEIRESLDTQFLQVCRSRRHSD 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,849
Number of Sequences: 438
Number of extensions: 5193
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)