BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_I02 (812 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha... 28 1.8 SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 27 2.4 SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 4.2 SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 25 9.7 SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 9.7 >SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 256 Score = 27.9 bits (59), Expect = 1.8 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = -3 Query: 270 YCILSEARCVTSYQVHDYMTSFFFLXR 190 YC +RC+T ++H M SF F+ + Sbjct: 184 YCAFPFSRCLTVEELHTLMNSFSFIYK 210 >SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 389 Score = 27.5 bits (58), Expect = 2.4 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = -2 Query: 697 YQANSPVR-LKNIPLSNTSKLVTPT*YEQERFIKKKSKSSVMGPNFHETFENN*PTDSIK 521 Y N VR L+ P S T++ +TP F + SK S TF+N P S++ Sbjct: 114 YMLNKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISVQ 173 >SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1826 Score = 26.6 bits (56), Expect = 4.2 Identities = 7/24 (29%), Positives = 17/24 (70%) Frame = -1 Query: 338 LSIWNFYYLYQYISIICSLICVFI 267 +++W +Y+Y ++++ +IC FI Sbjct: 1435 MTVWTTHYVYFWVTMFALVICPFI 1458 >SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 945 Score = 25.4 bits (53), Expect = 9.7 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +1 Query: 655 TKGCSSSELVNLLGRLRQSVIVWNLYR 735 T+ SS++LV++ RLR+ + + LYR Sbjct: 256 TQESSSNQLVSIYSRLRECLDIAQLYR 282 >SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|Schizosaccharomyces pombe|chr 1|||Manual Length = 811 Score = 25.4 bits (53), Expect = 9.7 Identities = 21/76 (27%), Positives = 35/76 (46%) Frame = -1 Query: 299 SIICSLICVFIVS*VRRDV*QVIKYMIT*HLSSFXLEGKFTFLDATMYVHIVSFYLYKSL 120 +I CS +C IV D V + + L +F +GK+ F V +V+ L K + Sbjct: 422 TIRCSNLCTEIVEYSSPDEVAVCN-LASVALPTFIKDGKYNFQKLHDVVKVVTRNLNKII 480 Query: 119 *VNFHTLTLTKNSTGR 72 VN++ + + S R Sbjct: 481 DVNYYPVPEARRSNMR 496 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,055,531 Number of Sequences: 5004 Number of extensions: 59530 Number of successful extensions: 136 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 132 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 136 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 396433620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -