Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I02
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    28   1.8  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    27   2.4  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   4.2  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   9.7  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   9.7  

>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 270 YCILSEARCVTSYQVHDYMTSFFFLXR 190
           YC    +RC+T  ++H  M SF F+ +
Sbjct: 184 YCAFPFSRCLTVEELHTLMNSFSFIYK 210


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 697 YQANSPVR-LKNIPLSNTSKLVTPT*YEQERFIKKKSKSSVMGPNFHETFENN*PTDSIK 521
           Y  N  VR L+  P S T++ +TP       F +  SK S        TF+N  P  S++
Sbjct: 114 YMLNKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISVQ 173


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = -1

Query: 338  LSIWNFYYLYQYISIICSLICVFI 267
            +++W  +Y+Y ++++   +IC FI
Sbjct: 1435 MTVWTTHYVYFWVTMFALVICPFI 1458


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 655 TKGCSSSELVNLLGRLRQSVIVWNLYR 735
           T+  SS++LV++  RLR+ + +  LYR
Sbjct: 256 TQESSSNQLVSIYSRLRECLDIAQLYR 282


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = -1

Query: 299 SIICSLICVFIVS*VRRDV*QVIKYMIT*HLSSFXLEGKFTFLDATMYVHIVSFYLYKSL 120
           +I CS +C  IV     D   V   + +  L +F  +GK+ F      V +V+  L K +
Sbjct: 422 TIRCSNLCTEIVEYSSPDEVAVCN-LASVALPTFIKDGKYNFQKLHDVVKVVTRNLNKII 480

Query: 119 *VNFHTLTLTKNSTGR 72
            VN++ +   + S  R
Sbjct: 481 DVNYYPVPEARRSNMR 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,531
Number of Sequences: 5004
Number of extensions: 59530
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)