Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I02
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.5  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    24   1.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.4  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 86  NSTGRSNNSWNNEEYNHD 33
           N T  +NN++NN  YN++
Sbjct: 320 NKTIHNNNNYNNNNYNNN 337


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 86  NSTGRSNNSWNNEEYNH 36
           N T  +NN++NN  YN+
Sbjct: 87  NKTIHNNNNYNNNNYNN 103


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 86  NSTGRSNNSWNNEEYNH 36
           N T  +NN++NN  YN+
Sbjct: 87  NKTIHNNNNYNNNNYNN 103



 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 86  NSTGRSNNSWNNEEYNHDS 30
           N+   +NN++NN  YN+++
Sbjct: 92  NNNNYNNNNYNNYNYNNNN 110


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 658  KGCSSSELVNLLGRLRQS 711
            K C   E +++ G+LRQS
Sbjct: 1277 KNCGKGERIDMNGKLRQS 1294


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 113 NFHTLTLTKNSTGRSNNSWNNEEYNHDS 30
           N  T+T    +T  SNN+ NN   N+++
Sbjct: 224 NNSTITAGNANTNASNNNNNNNNNNNNN 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,712
Number of Sequences: 438
Number of extensions: 3925
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)