Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I02
         (812 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59790.1 68416.m06672 mitogen-activated protein kinase, putat...    29   2.8  
At4g18290.1 68417.m02714 inward rectifying potassium channel (KA...    28   8.5  

>At3g59790.1 68416.m06672 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK10) mitogen-activated protein
           kinase (MAPK)(AtMPK10), PMID:12119167
          Length = 393

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 746 AYTYLYKFQTITDCLSLPSKFTSSLEEHPFVE 651
           A+ YL  F  ITD       F   L+EHPF E
Sbjct: 341 AHPYLSSFHDITDEPECSEPFNFDLDEHPFSE 372


>At4g18290.1 68417.m02714 inward rectifying potassium channel (KAT2)
           identical to inward rectifying K+ channel [Arabidopsis
           thaliana] gi|12666980|emb|CAC28122; Shaker-type channel
           (1P/6TM), PMID:11500563
          Length = 697

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 646 KYSTKGCSSSELVNLLGRLRQSVIVWNLYRYVYANLQTYHGDARXGICQMSS 801
           K+ T+G    E +N L +  +S I   L+  +  N+  +HG +R  + Q+ S
Sbjct: 340 KFKTEGLKQQEALNGLPKAIRSSIANYLFFPIVQNVYLFHGVSRNFLFQLVS 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,259,567
Number of Sequences: 28952
Number of extensions: 284649
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)