Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I01
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    30   0.35 
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    29   1.1  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   4.4  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   4.4  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   5.8  

>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
 Frame = +2

Query: 254 TMGKRLQDIGVENTEENRRRYRQLLFSSDAVLPEN-ISGVILFHETLYQKADDGTPLVSL 430
           T+ + L ++ + N EE+R + +QLL S   V+P+N I  V+L    L    D  + +V L
Sbjct: 266 TLYELLSEVRI-NEEEDRVKLKQLLSSKLEVIPKNYIQKVVLNILFLLLSIDTHSDVVEL 324

Query: 431 LEKKGII----PGIKVDKGV 478
           L K   I    P I+ D GV
Sbjct: 325 LFKCAQIVKGRPDIEKDFGV 344


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 26/104 (25%), Positives = 33/104 (31%), Gaps = 5/104 (4%)
 Frame = +1

Query: 409 WNPSGLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVAL 588
           +NP  LP    G  P H       P    G         RP             +     
Sbjct: 112 YNPHYLPVNSNGSSPSHTSSLDSIPGYASGSGPFKTPY-RPVAVSESSSRSSFSMGSSEF 170

Query: 589 RAEDWPQHPLVTKL-----SRKTPMFSPATPPSVRANASCQLSS 705
            +  W Q P+ + L     S+    FSPA+ PS     S  LSS
Sbjct: 171 ASSTWSQSPMQSSLYVSPSSQPLDRFSPASFPSKETLTSSSLSS 214


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 161 PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQL 325
           P PE ++E  K+A++   P K   +A ES     K  +++  + +  N   YR L
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL--KESHVNETPYRGL 529


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 356 NISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECT-TQGLDDL 532
           NI GV+    +  ++  + + L +L EK G    I          GSE   + T+   D+
Sbjct: 357 NIVGVVATLSSSSEENSEASNLSTLFEKSGNFEEI---------LGSESHSSITEKTRDI 407

Query: 533 AQRCAQYKKDGCHFAKW 583
           A+  A + K+G +F+ W
Sbjct: 408 AKNVATWLKNGENFSSW 424


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 275 DIGVENTEENRRRYRQLLFSSDAVLPENISGVILFHETLYQKADDGTPLVSLLEKKGIIP 454
           D G+E +E NRR  +  +FS       ++S     H TL    D  +  V++  + G +P
Sbjct: 494 DSGIEASESNRR--KSDIFSFSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGSLP 551

Query: 455 GIK 463
            ++
Sbjct: 552 PLR 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,471,396
Number of Sequences: 5004
Number of extensions: 75765
Number of successful extensions: 220
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)