Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_I01
(838 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0) 234 7e-62
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0) 234 7e-62
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 38 0.013
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 38 0.013
SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.16
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 33 0.29
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.66
SB_34292| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 31 1.5
SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_51702| Best HMM Match : SURF6 (HMM E-Value=4) 30 2.7
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2) 29 4.7
SB_24645| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 29 4.7
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 29 4.7
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25) 29 4.7
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2) 29 4.7
SB_55789| Best HMM Match : ERG2_Sigma1R (HMM E-Value=3.6e-10) 29 6.2
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 29 6.2
SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33) 28 8.2
SB_32283| Best HMM Match : Homeobox (HMM E-Value=4.5e-20) 28 8.2
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31) 28 8.2
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 28 8.2
SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 28 8.2
SB_10368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 949
Score = 234 bits (572), Expect = 7e-62
Identities = 116/153 (75%), Positives = 127/153 (83%), Gaps = 1/153 (0%)
Frame = +2
Query: 164 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 343
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTSGK 65
Query: 344 VLPENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DECTTQG 520
+ ISGVILFHET+YQKADDGTP V LL +GIIPGIKVDKGVV L G++ E TTQG
Sbjct: 66 EMSNAISGVILFHETVYQKADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGETTTQG 125
Query: 521 LDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPS 619
LD L +RCAQYKKDGC FAKWRCVLKI TPS
Sbjct: 126 LDGLGERCAQYKKDGCDFAKWRCVLKITDYTPS 158
Score = 70.9 bits (166), Expect = 1e-12
Identities = 33/46 (71%), Positives = 38/46 (82%)
Frame = +3
Query: 615 PRYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQK 752
P A++ENANVLARYASICQ +VPIVEPEVL DG+H L+RAQK
Sbjct: 157 PSELAMKENANVLARYASICQQNGLVPIVEPEVLCDGDHTLERAQK 202
>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 304
Score = 234 bits (572), Expect = 7e-62
Identities = 116/153 (75%), Positives = 127/153 (83%), Gaps = 1/153 (0%)
Frame = +2
Query: 164 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 343
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTSGK 65
Query: 344 VLPENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DECTTQG 520
+ ISGVILFHET+YQKADDGTP V LL +GIIPGIKVDKGVV L G++ E TTQG
Sbjct: 66 EMSNAISGVILFHETVYQKADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGETTTQG 125
Query: 521 LDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPS 619
LD L +RCAQYKKDGC FAKWRCVLKI TPS
Sbjct: 126 LDGLGERCAQYKKDGCDFAKWRCVLKITDYTPS 158
Score = 70.9 bits (166), Expect = 1e-12
Identities = 33/46 (71%), Positives = 38/46 (82%)
Frame = +3
Query: 615 PRYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQK 752
P A++ENANVLARYASICQ +VPIVEPEVL DG+H L+RAQK
Sbjct: 157 PSELAMKENANVLARYASICQQNGLVPIVEPEVLCDGDHTLERAQK 202
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 37.5 bits (83), Expect = 0.013
Identities = 33/117 (28%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Frame = +1
Query: 382 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 552
R P G + G P E G P GR + RP +GR H PG P P
Sbjct: 359 RPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPH 418
Query: 553 QEGRLPLRQVALRAE-DWP--QHPLVTKLSRKTPMFSPATPPSVRANASCQLSSPKF 714
+ GR P Q E W +H ++ P+F P PP S P +
Sbjct: 419 EPGRPPYEQRRPPHEKSWQAFEHQRISH-EHGGPLFEPGRPPHEPGRPSFDQRRPPY 474
Score = 31.9 bits (69), Expect = 0.66
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +1
Query: 382 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 552
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 324 RPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPY 383
Query: 553 QEGRLP 570
+ GR P
Sbjct: 384 EPGRPP 389
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +1
Query: 382 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 552
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 331 RPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPH 390
Query: 553 QEGRLP 570
+ GR P
Sbjct: 391 EPGRPP 396
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 37.5 bits (83), Expect = 0.013
Identities = 33/117 (28%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Frame = +1
Query: 382 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 552
R P G + G P E G P GR + RP +GR H PG P P
Sbjct: 125 RPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPH 184
Query: 553 QEGRLPLRQVALRAE-DWP--QHPLVTKLSRKTPMFSPATPPSVRANASCQLSSPKF 714
+ GR P Q E W +H ++ P+F P PP S P +
Sbjct: 185 EPGRPPYEQRRPPHEKSWQAFEHQRISH-EHGGPLFEPGRPPHEPGRPSFDQRRPPY 240
Score = 31.9 bits (69), Expect = 0.66
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +1
Query: 382 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 552
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 90 RPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPY 149
Query: 553 QEGRLP 570
+ GR P
Sbjct: 150 EPGRPP 155
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +1
Query: 382 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 552
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 97 RPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPH 156
Query: 553 QEGRLP 570
+ GR P
Sbjct: 157 EPGRPP 162
>SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 33.9 bits (74), Expect = 0.16
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 1/144 (0%)
Frame = +1
Query: 373 PVPRDPLPEG*RWNPSGLPAGEEGHHPRHQ-GRQGCRPAVRIGRRMHHPGSGRPRPALRP 549
P P P G + S A EE P H R P + G +M + P L P
Sbjct: 351 PPPSLPPRPGKQRATSVTSAHEERAPPAHLVQRMNSMPLISTGFKMEND----QLPGLPP 406
Query: 550 VQEGRLPLRQVALRAEDWPQHPLVTKLSRKTPMFSPATPPSVRANASCQLSSPKFYLMAS 729
+ L L++ A P+HPL + P+ ++ PS+ S L P+F +
Sbjct: 407 KPDRPLSLQRDANAPPLPPRHPLRVSPTTPPPLPPRSSHPSIELKPSIPL-PPRFANVND 465
Query: 730 TTWTAPKR*LXSFWPPCXRAXXPP 801
+APK PP PP
Sbjct: 466 VKSSAPKNGPEECAPPALPPALPP 489
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 33.1 bits (72), Expect = 0.29
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 409 WNPSGLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGR---PRPALRPVQEGRLP 570
W P G+P G P GR G P G + G+ PRP +RP + GR+P
Sbjct: 515 WRPGGIPGRTPGRRPG--GRPGNIPPFVPGLIIPSRRPGKRPGPRPGIRPGRGGRIP 569
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 31.9 bits (69), Expect = 0.66
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 49 CQPSITCVVADPKSASLSCCN*YKNKKITNNVHLLSIPNS*AAGGAQEDR--SSNCSSRK 222
CQ TC + + +C Y + TNNV+ + P+ GG +D S +C+
Sbjct: 3885 CQNGGTCASPSSSNYTCTCAPGYTGENCTNNVNECNDPDLCKNGGVCKDSFGSYSCNCSS 3944
Query: 223 GYPGR 237
Y G+
Sbjct: 3945 AYSGK 3949
>SB_34292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +2
Query: 581 WRCVLKIGRNTPSLPSY-PGKRQCS 652
WRC GRN P LPSY R CS
Sbjct: 505 WRCAFDDGRNPPLLPSYNSSSRICS 529
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 613 PLVTKLSRKTPMFS-PATPPSVRANASCQLSSP 708
PL+T +S TP+ PA PP+ +A LSSP
Sbjct: 252 PLLTTMSLDTPLAEPPAPPPTTPTSAGAPLSSP 284
>SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 359 ISGVILFHETLYQKADDGTPLVSLLEKK 442
+SG ++ +E L+Q DD TPLV +L ++
Sbjct: 103 LSGSVVSNEWLHQLMDDSTPLVQILAER 130
>SB_51702| Best HMM Match : SURF6 (HMM E-Value=4)
Length = 260
Score = 29.9 bits (64), Expect = 2.7
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Frame = +2
Query: 188 KKIAQAIVAPA-KGILAADESTGTMGKRLQDIGVENT-EENRRRYRQLLFSSDAVLPENI 361
K +A++ +A K E TGT +QD G NT + ++ + + + S VL +
Sbjct: 92 KHVARSFIAELEKRKQTGKEGTGTDASEMQDSGAVNTCQSDKHVFTKHVAESKVVLSPSS 151
Query: 362 ---SGVILFHE-TLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDD 529
GV++ E + QK D V+ E +G + + G+ L ++E + +
Sbjct: 152 HGKQGVLMMPEYVVGQKPDKQKKKVTRDESQGSVKSQEKTVGITHLQVEQEEVEEEEIST 211
Query: 530 LAQRCAQYKKD 562
+ ++D
Sbjct: 212 TTLTAGENQRD 222
>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
Length = 878
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = +1
Query: 517 GSGRPRPALRPVQEGRLPLRQVALRAEDWPQHPLVTKLSRKTPMFSP---ATPPSVRAN 684
GSG P+ L +E P+ + P+ + + R+ PMF P A PP N
Sbjct: 40 GSGTPKATLGGERESSDPIVPFGFQYYPGPEEQSMFNMERENPMFGPVLRARPPLFSGN 98
>SB_24645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +2
Query: 149 YFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLL 328
Y Q E ELK+ Q+ + I + +S G GK + E EE RY +
Sbjct: 91 YLQMNDEESLPELKRARQSFITMVTRINNSSQSVGKDGKAKTSLFSE--EEKDTRYLVIA 148
Query: 329 FSSD 340
FS+D
Sbjct: 149 FSND 152
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 634 RKTPMFSPATPPSVRANASCQLSSPKF 714
R+T +FS PPS+ A AS L++P F
Sbjct: 311 RQTMLFSATIPPSIEAMASRLLNAPVF 337
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 549 WAQRWARSSRPWVVHSSSDPNSGTTPLSTLMPGMMPFFSSR 427
WAQ ++ SS PW S + SGT S+L ++ +S +
Sbjct: 5909 WAQNYSSSSSPWAPSSPASVRSGTYS-SSLATDILDTYSQK 5948
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 29.1 bits (62), Expect = 4.7
Identities = 35/125 (28%), Positives = 45/125 (36%), Gaps = 2/125 (1%)
Frame = +1
Query: 277 HRRGEHRGEPSSLSPTAIQL*RCAPREHLWCDPVPRDPLPEG*RWNPSG--LPAGEEGHH 450
+ R H GEPS PT +P P +P+ P +P
Sbjct: 653 YSRATHHGEPSPRIPTVTPRVPISPLAES-PQKSPLEPVTATQMTPPVAPRVPPPSPRMQ 711
Query: 451 PRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVALRAEDWPQHPLVTKL 630
P G P RMH P SG PR + P G PLR L E P P++T
Sbjct: 712 PPASGFLRMHPPASGFPRMHPPASGFPR--MHPPASGP-PLRCTPLLQEVQPL-PMLTAE 767
Query: 631 SRKTP 645
+ + P
Sbjct: 768 THQPP 772
>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
Length = 1508
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 332 SSDAVLPENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVD 469
+S LP+++ G+ ++Q A D PL++ + IIPG+ ++
Sbjct: 697 TSPVTLPDSVPGLPAVPSIMHQ-ARDSPPLLTFFSRNDIIPGLDLN 741
>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
Length = 1706
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 332 SSDAVLPENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVD 469
+S LP+++ G+ ++Q A D PL++ + IIPG+ ++
Sbjct: 58 TSPVTLPDSVPGLPAVPSIMHQ-ARDSPPLLTFFSRNDIIPGLDLN 102
>SB_55789| Best HMM Match : ERG2_Sigma1R (HMM E-Value=3.6e-10)
Length = 192
Score = 28.7 bits (61), Expect = 6.2
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Frame = +1
Query: 421 GLPAGEEGHHPRHQG------RQGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQ- 579
G P G EGH RH QG + A R G PG A E + L +
Sbjct: 37 GTPIGTEGHTGRHTADDYFHILQGEQLAFRAGIEFLQPGGSTSSRAAATAVELQFALYES 96
Query: 580 ------VALRAEDWPQHPLVTKLSR 636
V L+ DW ++P VT+L+R
Sbjct: 97 YYNSLAVVLQRRDW-ENPGVTQLNR 120
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 647 IGVFLDSLVT-RGCCGQSSARNATWRSGSRPSCTGRSAGRGRPDPGW 510
+G+ DS V RGCC +S N W SC+ + + R D GW
Sbjct: 1296 LGINKDSCVRGRGCCWDNSVPNVPWCFYHPSSCSSINP-QLRRDCGW 1341
>SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33)
Length = 689
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1
Query: 409 IVSLLVKGLVEQDHTRDVLGEHSVRAE*QLAITTTVLLC 293
+V+LLV G ++ V+G+ SV + ++ I TTVL C
Sbjct: 425 LVALLVFGQCDRQDETGVVGDISVVVDTRVIIDTTVLKC 463
>SB_32283| Best HMM Match : Homeobox (HMM E-Value=4.5e-20)
Length = 398
Score = 28.3 bits (60), Expect = 8.2
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +1
Query: 451 PRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVALR-AEDWPQH-PLVT 624
P+ G+ RP V +G+ P + P +RP G++P R AL PQ LV
Sbjct: 159 PQALGQVPFRPQV-LGQVPIRPQALGQVP-IRPQALGQVPTRPPALGLVPARPQALDLVL 216
Query: 625 KLSRKTPMFSPATPPSVRANASCQLSSPKFY 717
+R +P SP T PS+ ++ + ++ F+
Sbjct: 217 ARTRSSPCSSPGTRPSLCSSPDTRTTTRSFF 247
>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
Length = 708
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 178 GGAQEDRSSNCSSRKGYPGR*RIHRYNG-QAFAGHRRGEHRGEPSS 312
GG+Q + +GYPG R + G QA AG G RG P +
Sbjct: 618 GGSQAEAGGMWGGARGYPGTGRKGGHGGSQAKAGGMWGGARGYPGT 663
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 415 PSGLP-AGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRPVQ--EGRLPLRQ 579
PSG P G+EG P+ G+ RP+ RR + G+P P+ GRL ++Q
Sbjct: 333 PSGAPPTGDEGMAPQ-PGQGQARPSYMNKRRQYPAQGGQPGYGAMPLDGPMGRLTVQQ 389
>SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 632 DSLVTRGCCGQSSARNATWRSGSRPSCTGRSAGRGRPDPGWCIRL 498
D L + CGQSS + +G+ CTG GR P IR+
Sbjct: 72 DFLTSPLSCGQSSKNSPAMLAGAGAVCTGLKNGRLSGPPCLSIRI 116
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/87 (26%), Positives = 41/87 (47%)
Frame = +2
Query: 170 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDAVL 349
E+Q+ L K AQ +V+ +KG+ D + + K + +N E++R R + S D
Sbjct: 1006 EIQQGLNKAAQCVVSVSKGVSQWDRTCRALRKAEKRDDSDN-EDSRSRSASNVGSDD--- 1061
Query: 350 PENISGVILFHETLYQKADDGTPLVSL 430
E+ S + DD + +VS+
Sbjct: 1062 -ESRSEAAPTRRSARMPTDDASTVVSM 1087
>SB_10368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Frame = +1
Query: 481 PAVRIGRRMHHPGSGRPRPALRPVQEGRLP-----LRQVALRA-EDWPQHPLVT 624
PA+R M + RP PA+RPV R P L+ + L + E+W +PL+T
Sbjct: 352 PAMRPLPAMRPLPAMRPLPAMRPVPAMRPPPAMYLLQDMPLESKEEWQLYPLLT 405
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,907,970
Number of Sequences: 59808
Number of extensions: 663311
Number of successful extensions: 1987
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1964
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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