Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_I01
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.5  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   4.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 398 SGKGSRGTGSHQRCSRGAQRQS*IAVGDN 312
           +G G+ G+GS +  S G+  Q+  A  +N
Sbjct: 596 NGSGASGSGSAENLSSGSNNQTSSASREN 624


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 786 PXTRRPERXQSPFGRGPGRARHQVKLRARQLAR 688
           P TRR +R  +     P   R +    A QLAR
Sbjct: 2   PRTRRVKRSHNGKNGSPEEKRPRTAFSAEQLAR 34


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -3

Query: 317 DNDDGSPLCSPRRCPANACPLYRWIRQRPGYP 222
           D   G+P+C       N   L +W   + G+P
Sbjct: 324 DRMQGNPICVQIPWDKNVEALAKWANGQTGFP 355


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +1

Query: 421  GLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRP 549
            G   G+ G    H G +G      +G   + P SG P P   P
Sbjct: 1821 GSQYGQYGAPYDHYGSRGSVGRRSVGSARNIPVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,011
Number of Sequences: 438
Number of extensions: 5778
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)