Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H24
         (871 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1741| Best HMM Match : Alk_phosphatase (HMM E-Value=0.033)         131   8e-31
SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   2e-12
SB_57342| Best HMM Match : Arf (HMM E-Value=0)                         29   4.9  
SB_53490| Best HMM Match : Orthopox_C1 (HMM E-Value=8.6)               29   4.9  
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)      28   8.6  
SB_13945| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_1741| Best HMM Match : Alk_phosphatase (HMM E-Value=0.033)
          Length = 227

 Score =  131 bits (316), Expect = 8e-31
 Identities = 71/161 (44%), Positives = 98/161 (60%), Gaps = 9/161 (5%)
 Frame = +2

Query: 140 NLGVAKNVILFVGDGMGPNTVTATRIYKG------GESHRLVYEKFPHVGLLKTYSANKM 301
           N   AKN+I+FVGDG   NT TA RI KG      GE   L YE+FP+ GL KTY+ N+ 
Sbjct: 51  NTKPAKNLIIFVGDGCDINTNTAGRILKGQLKGQVGEKGWLSYEEFPYTGLSKTYTTNRQ 110

Query: 302 VPDSSCSATALFCGVKANQETIGVDASVKHKDCSASLRPEARLKSLASIALKAGKSAGFV 481
             DS+ +A A+F GVK     IGV+  V    C  +L  + ++ S+  +A +AG + GF+
Sbjct: 111 GSDSAGTANAMFTGVKTRSAMIGVNEEVVTNKCE-TLTEDRKVDSILKLAEEAGMATGFI 169

Query: 482 TTMRVTHATPGPIYAHSADRKWECEDKMPASA---AACKDI 595
           T+MR+THATP  +YAHSA R WE + +M +      +CKD+
Sbjct: 170 TSMRLTHATPANLYAHSASRYWESDKEMVSRGYGNTSCKDM 210


>SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 653

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
 Frame = +2

Query: 287 SANKMVPDSSCSATALF-CGVKANQE-TIGVDASVKHKDCSASLRPEARLKSLASIALKA 460
           + +++V   S +    F CG K ++  TIGVD +V    C  ++  +A++KS+ ++A +A
Sbjct: 529 AVSRVVGTGSRAGECCFTCGRKLSRAGTIGVDETVVRGLCK-TMTEKAKVKSIITLAEEA 587

Query: 461 GKSAGFVTTMRVTHATPGPIYAHSADRKW 547
           G S GFVTT RVTHA+P  +YAHS DR W
Sbjct: 588 GMSTGFVTTTRVTHASPAVLYAHSPDRDW 616


>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
          Length = 457

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 720 CKXHVSNGSSLVPVL--LDTRTCLPPPRITCKSFPGQSSTSCLAISLQ 583
           C+ +V+N     PVL  +D+RTC+ P + + +S  G+ +T    + L+
Sbjct: 85  CRQYVANLPLEHPVLQPMDSRTCVVPAKYSLRSGRGRKTTILYKLKLK 132


>SB_53490| Best HMM Match : Orthopox_C1 (HMM E-Value=8.6)
          Length = 392

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -3

Query: 539 DQHCGRKWDPGSHG 498
           DQ  GRKW PGSHG
Sbjct: 57  DQIAGRKWLPGSHG 70


>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
          Length = 211

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 278 KTYSANKMVPDSSCSATALFCGVKANQETIGVDASVKH 391
           K Y+    VPDS C   A  CG   N    GV+ S ++
Sbjct: 172 KKYNGTSTVPDSCCVVKADGCGKAVNGINKGVNNSTRN 209


>SB_13945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 485 TMRVTHATPGPIYAHSADRKWECEDKMPASAAACK 589
           T R     PGP ++ SAD   +  DK PASA+  K
Sbjct: 113 TTRGLDEEPGPSHSRSADYTPDHSDKAPASASRKK 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,063,932
Number of Sequences: 59808
Number of extensions: 604411
Number of successful extensions: 1391
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)