Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H24
         (871 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02320.1 68417.m00316 pectinesterase family protein contains ...    30   2.3  
At4g28100.1 68417.m04031 expressed protein                             29   5.3  
At2g41720.2 68415.m05156 pentatricopeptide (PPR) repeat-containi...    29   5.3  
At2g41720.1 68415.m05157 pentatricopeptide (PPR) repeat-containi...    29   5.3  
At1g30350.1 68414.m03711 pectate lyase family protein similar to...    29   5.3  
At1g15540.1 68414.m01869 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   9.3  

>At4g02320.1 68417.m00316 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 518

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 155 KNVILFVGDGMGPNTVTATRIYKGG 229
           K +I+F+GDG+G   + A R Y  G
Sbjct: 255 KTMIMFIGDGIGRTVIKANRSYADG 279


>At4g28100.1 68417.m04031 expressed protein
          Length = 304

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 305 PDSSCSATALFCGVKANQ-ETIGVDASVKHKDCSASLRPEARLKSL 439
           P+SSC A   FCG++ +Q  ++   A+        +  P A +K+L
Sbjct: 132 PNSSCDAILCFCGIRLHQISSLSCPAAFNVSSGFKNATPTAAVKNL 177


>At2g41720.2 68415.m05156 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 683

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = +2

Query: 179 DGMGPNTVTATRIYKGGESHRLVYEKFPHVGLLKTYSANKMVPDSSCSATALFCGVKANQ 358
           +G+GP+ VT   +    +S R   +   +  L+K     K+ PD++     ++C  K  Q
Sbjct: 110 NGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMK---GAKVRPDTTTFNIIIYCLSKLGQ 166

Query: 359 ETIGVDASVKHKDCSASLRPE 421
            +  +D     ++  A  RP+
Sbjct: 167 SSQALDLFNSMREKRAECRPD 187


>At2g41720.1 68415.m05157 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 822

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = +2

Query: 179 DGMGPNTVTATRIYKGGESHRLVYEKFPHVGLLKTYSANKMVPDSSCSATALFCGVKANQ 358
           +G+GP+ VT   +    +S R   +   +  L+K     K+ PD++     ++C  K  Q
Sbjct: 242 NGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMK---GAKVRPDTTTFNIIIYCLSKLGQ 298

Query: 359 ETIGVDASVKHKDCSASLRPE 421
            +  +D     ++  A  RP+
Sbjct: 299 SSQALDLFNSMREKRAECRPD 319


>At1g30350.1 68414.m03711 pectate lyase family protein similar to
           pectate lyase GP:14289169 from [Salix gilgiana];contains
           Pfam profile: PF00544: Pectate lyase
          Length = 368

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 134 KWNLGVAKNVILFVGDGMGPNTVTATRIYKGGESHRLVY 250
           +W  G +++V +  G   GP  V    +YKGGE  R+ +
Sbjct: 309 RWKWGTSRDVFMN-GAFFGPPGVIVRPLYKGGEGFRVAH 346


>At1g15540.1 68414.m01869 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to GS-AOP loci [GI:16118889,
           GI:16118887, GI:16118891, GI:16118893]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 320

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 230 ESHRLVYEKFPHVGLLKTYSANKMVPDSSCSATALFCGV 346
           + H L Y  F H GLL+ Y   ++   +  + T  +CG+
Sbjct: 281 KDHPLAYNPFHHDGLLEYYETLEVHLKAHRTMTKAYCGI 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,394,896
Number of Sequences: 28952
Number of extensions: 417493
Number of successful extensions: 1109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)