Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_H23
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 280 1e-76
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 280 1e-76
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 184 1e-47
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 104 1e-23
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 86 6e-18
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 77 3e-15
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 75 9e-15
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 41 2e-04
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 31 0.15
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 31 0.15
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 31 0.15
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 30 0.45
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 28 1.4
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 28 1.4
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 1.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.8
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 28 1.8
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 27 3.2
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.5
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 26 7.3
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 25 9.7
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.7
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 9.7
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 280 bits (687), Expect = 1e-76
Identities = 141/245 (57%), Positives = 176/245 (71%), Gaps = 1/245 (0%)
Frame = +1
Query: 7 DIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 186
++RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR DEQ+R +TIKSTAIS+
Sbjct: 18 NVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAISL 77
Query: 187 FFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 363
F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTDGAL
Sbjct: 78 FAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTI 132
Query: 364 XXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATY 543
QTETVLRQA+ ERI+P++ +NK+DR YQ F R+VE+VNV+I+TY
Sbjct: 133 EGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTY 192
Query: 544 NDDGGPMGEVRVDPSXGSVGFGSGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFS 723
D +G+ +V P G+V F SGLHGWAFT++QF+ YA KF ID K+M RLWGEN+
Sbjct: 193 YDK--VLGDCQVFPDKGTVAFASGLHGWAFTVRQFANRYAKKFGIDRNKMMQRLWGENYF 250
Query: 724 XXKRR 738
K +
Sbjct: 251 NPKTK 255
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = +2
Query: 704 YGEKIFXPSNEEVVXTKDD----DXKRSFXMYVXDPIY 805
+GE F P ++ + D +R+F M++ DPIY
Sbjct: 245 WGENYFNPKTKKWSKSATDANGNSNQRAFNMFILDPIY 282
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 280 bits (687), Expect = 1e-76
Identities = 141/245 (57%), Positives = 176/245 (71%), Gaps = 1/245 (0%)
Frame = +1
Query: 7 DIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 186
++RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR DEQ+R +TIKSTAIS+
Sbjct: 18 NVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAISL 77
Query: 187 FFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 363
F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTDGAL
Sbjct: 78 FAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTI 132
Query: 364 XXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATY 543
QTETVLRQA+ ERI+P++ +NK+DR YQ F R+VE+VNV+I+TY
Sbjct: 133 EGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTY 192
Query: 544 NDDGGPMGEVRVDPSXGSVGFGSGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFS 723
D +G+ +V P G+V F SGLHGWAFT++QF+ YA KF ID K+M RLWGEN+
Sbjct: 193 YDK--VLGDCQVFPDKGTVAFASGLHGWAFTVRQFANRYAKKFGIDRNKMMQRLWGENYF 250
Query: 724 XXKRR 738
K +
Sbjct: 251 NPKTK 255
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = +2
Query: 704 YGEKIFXPSNEEVVXTKDD----DXKRSFXMYVXDPIY 805
+GE F P ++ + D +R+F M++ DPIY
Sbjct: 245 WGENYFNPKTKKWSKSATDANGNSNQRAFNMFILDPIY 282
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 184 bits (448), Expect = 1e-47
Identities = 110/254 (43%), Positives = 145/254 (57%), Gaps = 10/254 (3%)
Frame = +1
Query: 7 DIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 186
+IRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R IT+KS+AIS+
Sbjct: 18 NIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISL 77
Query: 187 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 366
FF++ I+ D++ + EK +LINLIDSPGHVDFSSEV++A R+ DGA
Sbjct: 78 FFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVE 129
Query: 367 XXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATY- 543
QT TVLRQA +RIK IL +NKMDR + R+VE VN +I T+
Sbjct: 130 GVCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHLLRLVEQVNAVIGTFY 189
Query: 544 ---------NDDGGPMGEVRVDPSXGSVGFGSGLHGWAFTLKQFSEMYADKFKIDLVKLM 696
ND+ + P G+V F S GWAF L QFSE Y K + L
Sbjct: 190 TGELMQLADNDEVISDEGIYFAPEQGNVVFASAYDGWAFCLDQFSEFYEKKLGLKQKALT 249
Query: 697 NRLWGENFSXXKRR 738
LWG+ + K +
Sbjct: 250 KCLWGDYYLDPKTK 263
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 104 bits (250), Expect = 1e-23
Identities = 73/246 (29%), Positives = 114/246 (46%), Gaps = 2/246 (0%)
Frame = +1
Query: 7 DIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITIKSTAIS 183
D+R+ V H+ HGKS L D LV + R+TDT E++R ++IKST ++
Sbjct: 139 DVRSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMSIKSTPLT 198
Query: 184 MFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 363
+ D + K+ F ID+PGHVDF EV A + ++DG +
Sbjct: 199 LAVS------------DMKGKT---FAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVI 243
Query: 364 XXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATY 543
T +++ AI + +L +NK+DR Y + +++ VN I
Sbjct: 244 EGVMINTTRIIKHAILHDMPIVLVLNKVDRLILELRLPPNDAYHKLRHVIDEVNDNICQI 303
Query: 544 NDDGGPMGEVRVDPSXGSVGFGSGLHGWAFTLKQFSEMYADKF-KIDLVKLMNRLWGENF 720
+ D + RV P G+V F S G+ FTL F+++Y D+ ID+ RLWG+ +
Sbjct: 304 SKD----LKYRVSPELGNVCFASCDLGYCFTLSSFAKLYIDRHGGIDVDLFSKRLWGDIY 359
Query: 721 SXXKRR 738
K R
Sbjct: 360 FDSKTR 365
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 85.8 bits (203), Expect = 6e-18
Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Frame = +1
Query: 10 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA--GETRF---TDTRKDEQDRCITIKST 174
IRN+ + AH+D GK+T T+ ++ G I G+ D + E+++ ITI+S
Sbjct: 59 IRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQSA 118
Query: 175 AISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 354
A +E + N Q+ EK + IN+ID+PGH+DF+ EV ALRV DGA+
Sbjct: 119 ATHCTWERTVDQIE--ANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVL 176
Query: 355 XXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 453
QT TV RQ + I F+NKMDR
Sbjct: 177 CAVSGVQSQTITVDRQMRRYNVPRISFVNKMDR 209
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 77.0 bits (181), Expect = 3e-15
Identities = 55/150 (36%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Frame = +1
Query: 10 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFT--DTRKDEQDRCITIKSTAIS 183
IRN+ +IAH+D GK+TLT+ ++ G + +T T D E+ R ITI S AIS
Sbjct: 28 IRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDTVMDYLPAERQRGITINSAAIS 87
Query: 184 MFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 363
+ +QR INLID+PGH DF+ EV ++ V DGA+
Sbjct: 88 FTWR------------NQR--------INLIDTPGHADFTFEVERSVAVLDGAVAIIDGS 127
Query: 364 XXXXXQTETVLRQAIAERIKPILFMNKMDR 453
QT+ V +QA I ++F+NKMDR
Sbjct: 128 AGVEAQTKVVWKQATKRGIPKVIFVNKMDR 157
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 75.4 bits (177), Expect = 9e-15
Identities = 50/164 (30%), Positives = 77/164 (46%)
Frame = +1
Query: 10 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 189
+RN +VIAH+DHGKSTL+D ++ G+I +F D + E+ R IT+K+ SM
Sbjct: 58 VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLDKLEVERRRGITVKAQTCSMI 116
Query: 190 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 369
+ + +L+NLID+PGHVDF +EV +L +G +
Sbjct: 117 YYYH----------------GQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
Query: 370 XXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTF 501
QT + A ++ + I +NK+D QTF
Sbjct: 161 IQAQTLSNFYMAFSQNLVIIPVLNKVDLPTADVDRTLIQVQQTF 204
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 40.7 bits (91), Expect = 2e-04
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 1/146 (0%)
Frame = +1
Query: 16 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 195
N+ I HVDHGK+TLT ++ + A + D +E+ R ITI S + +E
Sbjct: 55 NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITISSAHVE--YE 112
Query: 196 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 375
+ +D PGH D+ + DGA+
Sbjct: 113 TANRHYAH------------------VDCPGHADYIKNMITGAATMDGAIIVVSATDGQM 154
Query: 376 XQTETVLRQAIAERIKPI-LFMNKMD 450
QT L A +K I +++NK+D
Sbjct: 155 PQTREHLLLARQVGVKQIVVYINKVD 180
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 16 NMSVIAHVDHGKSTLTDSLVSKAG 87
N+ VI HVD GKST T L+ K G
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 16 NMSVIAHVDHGKSTLTDSLVSKAG 87
N+ VI HVD GKST T L+ K G
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 16 NMSVIAHVDHGKSTLTDSLVSKAG 87
N+ VI HVD GKST T L+ K G
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 29.9 bits (64), Expect = 0.45
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +1
Query: 19 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR----FTDTRKDEQDRCITIKSTAISM 186
++++ HVDHGK+TL D+ K+ I + G T+ FT D+ + IT T M
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQKIGAFT-VPFDKGSKFITFLDTPGHM 231
Query: 187 FFELEEK 207
FE K
Sbjct: 232 AFEAMRK 238
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 28.3 bits (60), Expect = 1.4
Identities = 22/90 (24%), Positives = 43/90 (47%)
Frame = +1
Query: 49 KSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITN 228
K+ +T L S+ ++A A R+ D + ++ I +ST +S F D++FI
Sbjct: 462 KAGITTILNSRTSVLAAANPIFGRYDDMKTPGEN--IDFQSTILSRF------DMIFIVK 513
Query: 229 PDQREKSEKGFLINLIDSPGHVDFSSEVTA 318
+ E ++ ++I+ ++ SSE A
Sbjct: 514 DEHDETKDRNIARHVINLHTNLQESSETLA 543
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 28.3 bits (60), Expect = 1.4
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Frame = +1
Query: 16 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 195
N+ I HVD GKSTL +++ G++ R E + E + S A+ E
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV-DKRTMEK--IEREAKEAGKESWYLSWALDSTSE 296
Query: 196 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF-SSEVTAALRVTDGAL 345
EK E + F +L+D+PGH + ++ + A + G L
Sbjct: 297 EREKGKTVEVGRAYFETEHRRF--SLLDAPGHKGYVTNMINGASQADIGVL 345
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -3
Query: 392 TVSVCTHTPD-TQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 216
T + C+ P+ T ST + +V+ S + ++ ST P ++ + S S V +
Sbjct: 575 TTTTCSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLS-----SSSVHS 629
Query: 215 TKSFSSSSKNIEMAV 171
+ + SSSS++ M++
Sbjct: 630 SSAHSSSSRSSSMSL 644
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.8
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -3
Query: 395 STVSVCTHTPDTQSTT-TRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 219
+T S + +P + STT T +PS + S++ +S S+ S S S S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 218 NTKSFSSSSKNIEMAV 171
++ S SSSS + + +
Sbjct: 195 SSSSSSSSSSSSSVPI 210
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -3
Query: 398 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 219
++TVS + + T S+++ +PS + + TS S+ S S S S
Sbjct: 124 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 218 NTKSFSSSSKN 186
++ S SSSS +
Sbjct: 184 SSSSSSSSSSS 194
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 353 LTVCLVCVYKLKQYCVRLLPSASSLFCS*TKWTVLFLSSNLKLKN 487
L V + YKL+ RL +A S+ C WT LF SN+ +N
Sbjct: 348 LNVIGIAAYKLEDPVHRLFVTAFSVCCECLAWTSLF--SNISPEN 390
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -3
Query: 305 EEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSS-SSKNIEMAVDLMVMQRSCSSLRV 129
EE + P + K KK S F+ T +S S++NI+ A+DL+ + S S ++
Sbjct: 66 EEMESLPSKGGKGSKKAAKKNSSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSKDKI 125
>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +1
Query: 628 AFTLKQFSEMYADKFKIDLVKLMNRLWGENF 720
A+ + + E Y DK K ++K +W F
Sbjct: 153 AYVISYYVEKYVDKAKFPIIKGFIEMWNRKF 183
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 257 PFSLFSRWSGFVMNTK-SFSSSSKNIEMAVDLMVMQR 150
P S +S W+ V+NTK SFS ++M +L+ Q+
Sbjct: 168 PKSTYSYWAS-VLNTKASFSKKKSRVQMVKELIDGQK 203
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -2
Query: 699 VHKLDKVNLEFVSIHLRELFEGESPPMK 616
+H ++K+N+E +++ + +F ESP +K
Sbjct: 716 LHFIEKLNIELLNLLINVVFVTESPGVK 743
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 9.7
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -3
Query: 395 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 216
S+ S T TP + STT+ + S + S ++S S+ + + S S S +
Sbjct: 140 SSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSS-SASSSGSISSAD 198
Query: 215 TKSFSSSSKN 186
K+ S+SS +
Sbjct: 199 AKTVSASSNS 208
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 41 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 148
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,215
Number of Sequences: 5004
Number of extensions: 61233
Number of successful extensions: 233
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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