Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H21
         (867 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57736| Best HMM Match : GCC2_GCC3 (HMM E-Value=4.2e-09)             33   0.30 
SB_24788| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.8)            32   0.70 
SB_8425| Best HMM Match : EGF (HMM E-Value=0)                          29   3.7  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_57736| Best HMM Match : GCC2_GCC3 (HMM E-Value=4.2e-09)
          Length = 322

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 405 YQSNNGDKECEDVPADLTSPKTGQKAWDKCIE 500
           YQ N G++ C+  P   TS +TG K+ D C++
Sbjct: 241 YQDNEGEEFCKLCPQGKTSRETGAKSQDMCLD 272


>SB_24788| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.8)
          Length = 215

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 153 VHCEFEGEECKKGNLLGVCTNIRKCQSALNDIRNRKSPQICSFDNADPVVCCFDN 317
           +   F G++ +      +C N+   Q  + ++ NR+   IC+ DN   V+C  DN
Sbjct: 6   IETSFRGQQRRHNRQEAIC-NLDNRQEVICNLDNRQEA-ICNLDNRQEVICNLDN 58



 Score = 31.9 bits (69), Expect = 0.70
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 180 CKKGNLLGVCTNIRKCQSALNDIRNRKSPQICSFDNADPVVCCFDN 317
           C   N   V  N+   Q A+ ++ NR+   IC+ DN   V+C  DN
Sbjct: 54  CNLDNRQEVICNLDNRQEAICNLDNRQEA-ICNLDNRQEVICNLDN 98



 Score = 31.5 bits (68), Expect = 0.92
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 180 CKKGNLLGVCTNIRKCQSALNDIRNRKSPQICSFDNADPVVCCFDN 317
           C   N   V  N+   Q A+ ++ NR+   IC+ DN   V+C  DN
Sbjct: 24  CNLDNRQEVICNLDNRQEAICNLDNRQEV-ICNLDNRQEVICNLDN 68



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 180 CKKGNLLGVCTNIRKCQSALNDIRNRKSPQICSFDNADPVVCCFDN 317
           C   N   V  N+   Q A+ ++ NR+   IC+ +N   V+C  DN
Sbjct: 84  CNLDNRQEVICNLDNRQEAICNLDNRQEA-ICNLENTQEVICNLDN 128



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 180 CKKGNLLGVCTNIRKCQSALNDIRNRKSPQICSFDNADPVVCCFDN 317
           C   N   V  N+   Q  + ++ NR+   IC+ DN   V+C  DN
Sbjct: 114 CNLENTQEVICNLDNRQEGICNLNNRQEG-ICNLDNRQEVICNLDN 158


>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1955

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +3

Query: 393 PSYDYQSNNGDKECEDVPADLTSPKTGQKAWDKCIEYQEQLVYPCEKG 536
           P   YQ+  G   C + P   ++   G  + D C++       PC+ G
Sbjct: 397 PKGTYQTAIGQMSCSECPGTKSTHGPGADSHDMCLDIDNCASSPCQNG 444


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 393  PSYDYQSNNGDKECEDVPADLTSPKTGQKAWDKC 494
            P+  YQ+ +G   C   P      K+GQ+A ++C
Sbjct: 4577 PTATYQNQSGQASCVHCPPGTYQNKSGQEACNQC 4610


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,072,715
Number of Sequences: 59808
Number of extensions: 500924
Number of successful extensions: 1221
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)