Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_H21
(867 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47356-8|CAD27185.1| 477|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z47075-8|CAA87381.2| 477|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z81115-2|CAB03292.1| 314|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z78019-2|CAB01451.1| 347|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z81134-5|CAB54316.1| 101|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z81088-11|CAB03132.1| 339|Caenorhabditis elegans Hypothetical p... 28 9.9
Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical pr... 28 9.9
U10401-8|AAA19055.1| 340|Caenorhabditis elegans Tata-binding pr... 28 9.9
L07754-1|AAA03582.1| 340|Caenorhabditis elegans TATA-box bindin... 28 9.9
AF303249-1|AAG50207.1| 340|Caenorhabditis elegans transcription... 28 9.9
>Z47356-8|CAD27185.1| 477|Caenorhabditis elegans Hypothetical
protein E02H1.7 protein.
Length = 477
Score = 32.3 bits (70), Expect = 0.46
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +3
Query: 3 LALASDRRWRQTRHVPYEPIK*CANNKLT--LNSLKMD-QSIYLLLMLVLFVCVHCEFEG 173
+++++DRRWRQ + Y+ + C +++ L +LK+ Q I ++ ++VLF C C +
Sbjct: 340 ISVSADRRWRQEK--LYKQMTDCCIDEVATPLRNLKLSPQEIVVIKIIVLFNC-GCSSDY 396
Query: 174 EECKKGNLLGVCTNIRKCQSAL 239
E + + V T K SAL
Sbjct: 397 SEITEASRRIVLTFRNKVVSAL 418
>Z47075-8|CAA87381.2| 477|Caenorhabditis elegans Hypothetical
protein E02H1.7 protein.
Length = 477
Score = 32.3 bits (70), Expect = 0.46
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +3
Query: 3 LALASDRRWRQTRHVPYEPIK*CANNKLT--LNSLKMD-QSIYLLLMLVLFVCVHCEFEG 173
+++++DRRWRQ + Y+ + C +++ L +LK+ Q I ++ ++VLF C C +
Sbjct: 340 ISVSADRRWRQEK--LYKQMTDCCIDEVATPLRNLKLSPQEIVVIKIIVLFNC-GCSSDY 396
Query: 174 EECKKGNLLGVCTNIRKCQSAL 239
E + + V T K SAL
Sbjct: 397 SEITEASRRIVLTFRNKVVSAL 418
>Z81115-2|CAB03292.1| 314|Caenorhabditis elegans Hypothetical
protein T05D4.2 protein.
Length = 314
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 381 EYVPPSYDYQSNNGDKECEDVPADLTS-PKTGQKAWDKCIEYQEQ 512
E++ ++ Y NN +C ++ D+ S P+ K D+C EYQ Q
Sbjct: 43 EHLTSAHSYTKNN-HCQCYEIAVDICSEPRVRVKGLDRCWEYQIQ 86
>Z78019-2|CAB01451.1| 347|Caenorhabditis elegans Hypothetical
protein ZK863.5 protein.
Length = 347
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 180 ILHPRIRNEHTQITLALTTNILID-PFLKSSV 88
IL P IR +H Q+T ALT ++ F+ SS+
Sbjct: 216 ILRPEIREKHRQLTWALTVQTIVPIAFIFSSI 247
>Z81134-5|CAB54316.1| 101|Caenorhabditis elegans Hypothetical
protein T28D6.9 protein.
Length = 101
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/27 (37%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -2
Query: 461 RRQIRRYILAFLV-AIVGLVIIGGWYV 384
RRQIR+Y++A +V +I ++++ W +
Sbjct: 50 RRQIRKYVIASIVGSIFWIIVLSAWEI 76
>Z81088-11|CAB03132.1| 339|Caenorhabditis elegans Hypothetical
protein F53F1.11 protein.
Length = 339
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 153 HTQITLALTTNILIDPFLKSSV*VYYS 73
HTQ+ ALTT +I FL +V +Y+S
Sbjct: 230 HTQLLRALTTQAIIPMFLGIAVLLYFS 256
>Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical
protein M18.1 protein.
Length = 337
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 792 SPGTRTXXRPAXXQSSGPXXPP 857
+PGTR+ RP S GP PP
Sbjct: 202 APGTRSVGRPGTAGSPGPQGPP 223
>U10401-8|AAA19055.1| 340|Caenorhabditis elegans Tata-binding
protein protein 1 protein.
Length = 340
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 500 FNTFVPRLLPGLGRRQIRRYILAFLVAIVGLVIIGG 393
F+T+ P L PGL R ++ ++ L+ + G V+I G
Sbjct: 283 FSTYEPELFPGLIYRMVKPRVV-LLIFVSGKVVITG 317
>L07754-1|AAA03582.1| 340|Caenorhabditis elegans TATA-box binding
protein protein.
Length = 340
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 500 FNTFVPRLLPGLGRRQIRRYILAFLVAIVGLVIIGG 393
F+T+ P L PGL R ++ ++ L+ + G V+I G
Sbjct: 283 FSTYEPELFPGLIYRMVKPRVV-LLIFVSGKVVITG 317
>AF303249-1|AAG50207.1| 340|Caenorhabditis elegans transcription
factor TFIID protein.
Length = 340
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 500 FNTFVPRLLPGLGRRQIRRYILAFLVAIVGLVIIGG 393
F+T+ P L PGL R ++ ++ L+ + G V+I G
Sbjct: 283 FSTYEPELFPGLIYRMVKPRVV-LLIFVSGKVVITG 317
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,004,810
Number of Sequences: 27780
Number of extensions: 361689
Number of successful extensions: 964
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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