Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H21
         (867 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33350.1 68415.m04088 hypothetical protein                          29   5.3  
At1g60030.1 68414.m06763 xanthine/uracil permease family protein...    29   5.3  
At1g64820.1 68414.m07349 MATE efflux family protein similar to r...    28   7.0  
At5g40820.1 68418.m04956 FAT domain-containing protein / phospha...    28   9.3  
At4g10440.1 68417.m01716 dehydration-responsive family protein s...    28   9.3  

>At2g33350.1 68415.m04088 hypothetical protein
          Length = 440

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 393 PSYDYQSNNGDKECEDVPADLTSPKTGQKAWDKCIEYQEQLVYP 524
           P  D+Q++NG   C D    + +P+  QKA     E Q  LV P
Sbjct: 268 PLMDFQADNGGFFCPDSIKRMFNPEDLQKALGGGAENQSHLVTP 311


>At1g60030.1 68414.m06763 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 538

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = -2

Query: 512 LLLIFNTFVPRLLPGLGRRQIRRYILAFLVAIV----GLVIIGGWY 387
           LLL+F+ ++P L+ G  R+   R+ + F V IV     L+ +GG Y
Sbjct: 207 LLLLFSQYIPHLIRG-ERQVFHRFAVIFSVVIVWIYAHLLTVGGAY 251


>At1g64820.1 68414.m07349 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family; contains 12
           transmembrane domains, PMID: 11152613
          Length = 502

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -1

Query: 231 TDISLYSYRLLINYLFYILHPRIRNEHTQITLALTTNILIDPFL 100
           T I+LYSYR    Y+F      +R   TQIT  L  +I ++ FL
Sbjct: 347 TTITLYSYRKSWGYVFSNEREVVRYA-TQITPILCLSIFVNSFL 389


>At5g40820.1 68418.m04956 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            similar to Atr protein [Xenopus laevis] GI:11385422;
            contains Pfam profiles PF00454 Phosphatidylinositol 3-
            and 4-kinase, PF02259 FAT domain, PF02260 FAT C domain
          Length = 2702

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 471  GQKAWDKCIEYQEQLVYPC 527
            GQK WD+   Y ++L+ PC
Sbjct: 1439 GQKLWDRFSNYVKELIAPC 1457


>At4g10440.1 68417.m01716 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 633

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 249 RNRKSPQICSFDNAD 293
           +N KSP ICS DNAD
Sbjct: 377 QNNKSPPICSSDNAD 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,892,202
Number of Sequences: 28952
Number of extensions: 327934
Number of successful extensions: 963
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)