Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H19
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103     31   1.2  
04_04_0261 + 24007790-24009098,24009191-24011118                       29   3.6  
12_01_0565 - 4575521-4575724                                           29   6.2  
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601...    29   6.2  
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979...    28   8.2  
02_01_0733 - 5477110-5477421,5478146-5478166                           28   8.2  

>08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103
          Length = 196

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 407 CGDSTCIERGLFCNGEKDCGD-GSDENSCDIDND 505
           CGD+ C   G+FC G  D     S+++S D+ +D
Sbjct: 157 CGDTGCFADGIFCPGNGDSDPAASNDSSVDMHSD 190


>04_04_0261 + 24007790-24009098,24009191-24011118
          Length = 1078

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 9   VVIPSWRATPVSLLWPRASCSPARLLMVT 95
           +++PSWRA     LW   SC  A  ++VT
Sbjct: 54  LLLPSWRAATDCCLWEGVSCDAASGVVVT 82


>12_01_0565 - 4575521-4575724
          Length = 67

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +2

Query: 464 GDGSDENSCDIDNDP---NRAPPCDSSQCVLPDCFCSEDGTVIPAT 592
           GDGSDE    +        R P     +  LPD    EDG ++PAT
Sbjct: 14  GDGSDEGKVTMYPPRAARGRLPRRHGGESRLPDQILGEDGGILPAT 59


>06_03_0345 +
           19758188-19758382,19759857-19759952,19760061-19760144,
           19760504-19760573,19760934-19761838,19763661-19764287
          Length = 658

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +2

Query: 335 KNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 508
           + +ER+    L   E    +G ++C  ST         G+K+  DG D+   D   +P
Sbjct: 441 RGEERRGVDKLRCHEEFVTEGHISCSVSTDDSDSSTSKGDKNAKDGKDKGDKDKSEEP 498


>04_03_0809 +
           19896801-19897170,19897265-19897513,19897850-19897900,
           19898007-19898267,19898427-19898479,19898746-19898887,
           19898972-19899226,19899616-19900640
          Length = 801

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = -1

Query: 490 TRIFIRSIATVLFAVTEKTAFNASRVAASEEAVLTEWFFSVQERLYFTLLVLELTIFHSI 311
           T++ + S+A +LF +     F   +V  +   +++ WF  +     + L+V E+TI  + 
Sbjct: 224 TQVVLISVA-ILFMLFSVQRFGTDKVGYTFAPIISVWFLLIAGIGLYNLVVHEITILKAF 282

Query: 310 FP 305
            P
Sbjct: 283 NP 284


>02_01_0733 - 5477110-5477421,5478146-5478166
          Length = 110

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +2

Query: 305 WKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFC--NGEKDCGDGSD 478
           W   +K+ K +   R+   L Y     C D  LA GD TC  R L    +G  D  DG  
Sbjct: 34  WTVRLKHTKGRRPRRERAVLRYGWHRFCADNGLAVGD-TCFFRALRSAGSGAGDVDDGDG 92

Query: 479 EN 484
           ++
Sbjct: 93  DH 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,943,990
Number of Sequences: 37544
Number of extensions: 431655
Number of successful extensions: 1384
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)