Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_H18
(860 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.039
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.052
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.85
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 28 2.0
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 3.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.4
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.4
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 27 4.5
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 27 4.5
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 6.0
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 6.0
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.5 bits (73), Expect = 0.039
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Frame = +1
Query: 481 SRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPA--LPSREARPLPRQGSSAPTLPRGE 654
S P S+ + + L+R +P+ ++AP LPS +A P+P ++ P
Sbjct: 993 SAPLSKPVSTSPAAPLARV----PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTS 1048
Query: 655 TRAIPRSKLRC-----PVPQPYPVVKHVGVPSRCPSTGPTP 762
T +P+S PVP P + + PS P P P
Sbjct: 1049 TPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV-PAP 1088
Score = 31.9 bits (69), Expect = 0.12
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +1
Query: 568 GARAPALPSREARPLPRQGSSAPTLPRGETRA--IPRSKLRCPVPQPYPVVKHVGVPSRC 741
GA PS A P+P S P +P+ +P PVP+P V V PS
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTA 1216
Query: 742 PSTGPTP 762
P PTP
Sbjct: 1217 PPV-PTP 1222
Score = 31.1 bits (67), Expect = 0.21
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 556 LPRQGARAPALPSRE-ARPLPRQGSSAPTLPRGETRAIPRSKLRCPVPQPYPVVKHVGVP 732
+P+ AP +P+ A P+P+ +AP +P + IP PVP+P V V P
Sbjct: 1142 VPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP-APSSGIP------PVPKPAAGVPPVPPP 1194
Query: 733 SRCPSTGPTP 762
S P P P
Sbjct: 1195 SEAPPV-PKP 1203
Score = 30.3 bits (65), Expect = 0.37
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +1
Query: 577 APALPSREA-RPLPRQGSSAPTLPRGETRA--IPRSKLRCPVPQPYPVVKHVGVPSRCPS 747
AP +P+ P+P+ +AP +P+ +P PVP+P V VPS P
Sbjct: 1082 APPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Query: 748 TGPTP 762
P P
Sbjct: 1142 V-PKP 1145
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Frame = +1
Query: 580 PALPSREARPLPRQGSSAPTLPRGETRAI------PRSKLRCPVPQPYP 708
PALP A P G P+ P + ++ P S L P P+P P
Sbjct: 822 PALPDEMASPSSSIGHPLPSPPPADFNSLNVDFYEPHSYLESPAPEPQP 870
Score = 27.1 bits (57), Expect = 3.4
Identities = 23/65 (35%), Positives = 28/65 (43%)
Frame = +1
Query: 568 GARAPALPSREARPLPRQGSSAPTLPRGETRAIPRSKLRCPVPQPYPVVKHVGVPSRCPS 747
GA PS A P+P S AP +P+ A P P P P V VP+ PS
Sbjct: 1119 GAPPVPKPSVAAPPVPVP-SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPA--PS 1175
Query: 748 TGPTP 762
+G P
Sbjct: 1176 SGIPP 1180
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.052
Identities = 36/133 (27%), Positives = 52/133 (39%)
Frame = +1
Query: 310 SPRPSPSXKGVPXTLRRRQTRSIPS*EARALSRQGSRAPTLRGRQTRAISREGVR*GSRP 489
S P P + P T R+ S +RA+S + P + GR A+ G SR
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLS----SSRAVSNPPAPPPAIPGRSAPALPPLGN--ASRT 412
Query: 490 RSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRGETRAIP 669
+ +P+ S ++ +LP + + + A PLP AP LP G A P
Sbjct: 413 STPPVPTPP----SLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
Query: 670 RSKLRCPVPQPYP 708
P P P P
Sbjct: 469 LPP-AAPAPPPAP 480
Score = 29.5 bits (63), Expect = 0.64
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +1
Query: 487 PRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRGETRAI 666
PRS R+ LS +R A+ A PA+P R A LP G+++ R T +
Sbjct: 366 PRSAPSTGRQPPPLSSSR----AVSNPPAPPPAIPGRSAPALPPLGNAS----RTSTPPV 417
Query: 667 PRSKLRCP-VPQPYPVVKHVGVPSRCPSTGPTP 762
P P P P +P P+ P P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 29.1 bits (62), Expect = 0.85
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +1
Query: 478 GSRPR--SRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRG 651
GS PR S A+ ++ S ++ S + P Q + PALPSR LP + S P++
Sbjct: 77 GSTPRTASPAVGNQDYSKPSYSQPS-YSQPSQPPKEPALPSRGTPSLPSRPGSRPSVLNQ 135
Query: 652 ETRAIP--RSKLRCPVPQP 702
E P R + +P P
Sbjct: 136 EQVPPPPVRPNVMSQMPPP 154
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 571 ARAPALPSREARPLPRQGSSAPTLPRGETRAIPRS 675
A + A+P EA+P P S+A P E+ +P +
Sbjct: 316 ATSDAVPPAEAKPEPVPASAAERAPTSESTTVPET 350
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 3.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 487 PRSR-AIPSRKEGALSRTRTS*QALPRQGARAPALPSR-EARPLPR--QGSSAP 636
PR R A P + A +R+ ++ ALP + P PSR + P P QG S+P
Sbjct: 2 PRRRSAAPPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPPTAVQGGSSP 55
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 401 YPVKVAVPQPYEVVKHVPYHVKEYVKV 481
Y +K+ VP P+ ++H P HV Y ++
Sbjct: 2322 YSLKLDVPLPFFALEHRPTHVISYTEL 2348
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 3.4
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +1
Query: 577 APALPSREARPLPRQGSSAPTLPRGETR-AIPRSKLRCPVPQP--YPVVKHV-GVPSR 738
AP +P + P P AP +P R A+P VPQP PVV V VP R
Sbjct: 595 APVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQR 652
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 577 APALPSREARPLPRQGSSAPTLPRGETRAIPRSKLRCPVPQPYPVVKHV 723
AP +PS RP AP++P+ + L P P PV V
Sbjct: 538 APEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEV 586
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 131 QLCFLSSSSHWQPLLLPAGKLSRA 60
++ L WQP+L+P GK+ RA
Sbjct: 223 EMAHLLKDPIWQPILMPNGKVLRA 246
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 633 PNLTPWRNTCHTPVEVKV 686
P++T W+N C+ P+ VK+
Sbjct: 272 PSVTFWQNICYPPIFVKI 289
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 371 VPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVK 478
+ YPV + P V V Q YEV V YH K+ +K
Sbjct: 304 ITYPVAETAPSLVVKVVNQDYEV--KVFYHYKDNIK 337
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 6.0
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 457 SREGVR*GSRPRSRAIPSRKEGALSRTRT-S*QALPRQGARAPALPSREARPLPRQGSSA 633
S + +R GS RSR+ PS + G R+ + S ++P A +P PR+
Sbjct: 335 SSQSLRLGSLHRSRS-PSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFPRRFERD 393
Query: 634 PTLPRGETRAIPRS 675
PT+P + R+
Sbjct: 394 PTIPPDSIKVYSRT 407
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,322
Number of Sequences: 5004
Number of extensions: 54378
Number of successful extensions: 185
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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