Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_H18
(860 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 38 0.011
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 38 0.011
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.026
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.026
At2g05510.1 68415.m00583 glycine-rich protein 35 0.080
At1g61255.1 68414.m06903 expressed protein 35 0.080
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 34 0.11
At1g27710.1 68414.m03387 glycine-rich protein 33 0.18
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 33 0.18
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 33 0.32
At2g15780.1 68415.m01809 glycine-rich protein similar to Blue co... 33 0.32
At5g61660.1 68418.m07736 glycine-rich protein 32 0.43
At5g46730.1 68418.m05757 glycine-rich protein 32 0.56
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 32 0.56
At5g66400.1 68418.m08374 dehydrin (RAB18) nearly identical to SP... 31 0.75
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 31 0.75
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 31 0.75
At2g05530.1 68415.m00585 glycine-rich protein 31 0.75
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 31 0.99
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.99
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 31 1.3
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 31 1.3
At3g24550.1 68416.m03083 protein kinase family protein contains ... 31 1.3
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 31 1.3
At1g11850.2 68414.m01364 expressed protein 31 1.3
At5g59170.1 68418.m07416 proline-rich family protein contains pr... 30 1.7
At4g29240.1 68417.m04182 leucine-rich repeat family protein / ex... 30 1.7
At2g05440.2 68415.m00575 glycine-rich protein 30 1.7
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 30 1.7
At1g11850.1 68414.m01363 expressed protein 30 1.7
At1g10830.1 68414.m01244 sodium symporter-related contains five ... 30 1.7
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 30 2.3
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 30 2.3
At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family... 30 2.3
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 29 3.0
At3g15400.1 68416.m01954 anther development protein, putative si... 29 3.0
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 29 3.0
At4g30460.1 68417.m04325 glycine-rich protein 29 4.0
At4g29030.1 68417.m04151 glycine-rich protein glycine-rich prote... 29 4.0
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 4.0
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 29 4.0
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 29 4.0
At5g61090.1 68418.m07665 proline-rich family protein contains pr... 29 5.3
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ... 29 5.3
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 29 5.3
At4g10330.1 68417.m01698 glycine-rich protein 29 5.3
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 29 5.3
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 5.3
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 5.3
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 29 5.3
At2g05440.1 68415.m00574 glycine-rich protein 29 5.3
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 29 5.3
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 29 5.3
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 28 7.0
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 28 7.0
At5g27870.1 68418.m03343 pectinesterase family protein similar t... 28 7.0
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 28 7.0
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 28 7.0
At4g29150.1 68417.m04171 calmodulin-binding family protein conta... 28 7.0
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 28 7.0
At1g66820.1 68414.m07595 glycine-rich protein 28 7.0
At1g47655.1 68414.m05294 Dof-type zinc finger domain-containing ... 28 7.0
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 28 7.0
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 28 7.0
At1g04800.1 68414.m00476 glycine-rich protein 28 7.0
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 28 9.2
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 9.2
At3g54800.1 68416.m06064 pleckstrin homology (PH) domain-contain... 28 9.2
At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kina... 28 9.2
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 37.5 bits (83), Expect = 0.011
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Frame = +1
Query: 403 SRQGSRAPTLRGRQ-TRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARA 579
SR+ SR+P+ RGR +++ SR R SR RSR SR + ++S ++ + +R+
Sbjct: 197 SRKDSRSPS-RGRSYSKSRSRSRGRSVSRSRSR---SRSRSRSPKAKSSRRSPAKSTSRS 252
Query: 580 PALPSREARPLPRQGSSAPTLPRGETRAIPRSKLRCPVPQPYPVVKHVGVPSR 738
P S+ P PR+ S P + P P P+ H PSR
Sbjct: 253 PGPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPAKSPI--HTRSPSR 303
Score = 31.1 bits (67), Expect = 0.99
Identities = 26/94 (27%), Positives = 45/94 (47%)
Frame = +1
Query: 481 SRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRGETR 660
SR SR K + SR R+ ++ R +R+ + ++ +R P + +S PR ++R
Sbjct: 201 SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSR 260
Query: 661 AIPRSKLRCPVPQPYPVVKHVGVPSRCPSTGPTP 762
+ + R P P V+ G S+ PS P+P
Sbjct: 261 SPSPRRSRSRSRSPLPSVQKEG--SKSPSK-PSP 291
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 37.5 bits (83), Expect = 0.011
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Frame = +1
Query: 403 SRQGSRAPTLRGRQ-TRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARA 579
SR+ SR+P+ RGR +++ SR R SR RSR SR + ++S ++ + +R+
Sbjct: 197 SRKDSRSPS-RGRSYSKSRSRSRGRSVSRSRSR---SRSRSRSPKAKSSRRSPAKSTSRS 252
Query: 580 PALPSREARPLPRQGSSAPTLPRGETRAIPRSKLRCPVPQPYPVVKHVGVPSR 738
P S+ P PR+ S P + P P P+ H PSR
Sbjct: 253 PGPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPAKSPI--HTRSPSR 303
Score = 31.1 bits (67), Expect = 0.99
Identities = 26/94 (27%), Positives = 45/94 (47%)
Frame = +1
Query: 481 SRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRGETR 660
SR SR K + SR R+ ++ R +R+ + ++ +R P + +S PR ++R
Sbjct: 201 SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSR 260
Query: 661 AIPRSKLRCPVPQPYPVVKHVGVPSRCPSTGPTP 762
+ + R P P V+ G S+ PS P+P
Sbjct: 261 SPSPRRSRSRSRSPLPSVQKEG--SKSPSK-PSP 291
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 36.3 bits (80), Expect = 0.026
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Frame = +1
Query: 409 QGSRAPTLRGRQTRAISREGV-----R*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGA 573
+G R+P++ G +R+ SR R SR RSR+ + SR+ +S P +
Sbjct: 6 RGRRSPSVSGSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRG 65
Query: 574 RAPALPSREAR---PLPRQGSSAPT 639
++PA P+R R P P +G+S+P+
Sbjct: 66 KSPAGPARRGRSPPPPPSKGASSPS 90
Score = 33.5 bits (73), Expect = 0.18
Identities = 30/90 (33%), Positives = 46/90 (51%)
Frame = +1
Query: 433 RGRQTRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPL 612
RGR++ ++S R SR RS + PSR ++SR+R+ ++L + PSR
Sbjct: 6 RGRRSPSVSGSSSRSSSRSRSGSSPSR---SISRSRSRSRSLSSSSS-----PSRSVS-- 55
Query: 613 PRQGSSAPTLPRGETRAIPRSKLRCPVPQP 702
GS +P RG++ A P + R P P P
Sbjct: 56 --SGSRSPPR-RGKSPAGPARRGRSPPPPP 82
Score = 27.9 bits (59), Expect = 9.2
Identities = 43/158 (27%), Positives = 61/158 (38%), Gaps = 3/158 (1%)
Frame = +1
Query: 298 DIPTSPRP-SPSXKGVPXTLRRRQTRSIPS*EARALSRQGSRAPTLRGRQTRAISREGVR 474
D P RP SPS P + R+ RS P R + R +R R + R
Sbjct: 256 DTPPRRRPASPSRGRSPSSPPPRRYRSPPRGSPRRI-----RGSPVRRRSPLPLRRRS-- 308
Query: 475 *GSRPRSRAIPSRKEGALSRTRTS*QALPRQG-ARAPALPSREAR-PLPRQGSSAPTLPR 648
PR P R+ R+R+ + R G +R+ ++ R+ R P R+G S+
Sbjct: 309 --PPPRRLRSPPRRSPIRRRSRSP---IRRPGRSRSSSISPRKGRGPAGRRGRSSSYSSS 363
Query: 649 GETRAIPRSKLRCPVPQPYPVVKHVGVPSRCPSTGPTP 762
R IPR R P+ K S S+ P P
Sbjct: 364 PSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPP 401
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 36.3 bits (80), Expect = 0.026
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Frame = +1
Query: 409 QGSRAPTLRGRQTRAISREGV-----R*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGA 573
+G R+P++ G +R+ SR R SR RSR+ + SR+ +S P +
Sbjct: 6 RGRRSPSVSGSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRG 65
Query: 574 RAPALPSREAR---PLPRQGSSAPT 639
++PA P+R R P P +G+S+P+
Sbjct: 66 KSPAGPARRGRSPPPPPSKGASSPS 90
Score = 33.5 bits (73), Expect = 0.18
Identities = 30/90 (33%), Positives = 46/90 (51%)
Frame = +1
Query: 433 RGRQTRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPL 612
RGR++ ++S R SR RS + PSR ++SR+R+ ++L + PSR
Sbjct: 6 RGRRSPSVSGSSSRSSSRSRSGSSPSR---SISRSRSRSRSLSSSSS-----PSRSVS-- 55
Query: 613 PRQGSSAPTLPRGETRAIPRSKLRCPVPQP 702
GS +P RG++ A P + R P P P
Sbjct: 56 --SGSRSPPR-RGKSPAGPARRGRSPPPPP 82
Score = 27.9 bits (59), Expect = 9.2
Identities = 43/158 (27%), Positives = 61/158 (38%), Gaps = 3/158 (1%)
Frame = +1
Query: 298 DIPTSPRP-SPSXKGVPXTLRRRQTRSIPS*EARALSRQGSRAPTLRGRQTRAISREGVR 474
D P RP SPS P + R+ RS P R + R +R R + R
Sbjct: 263 DTPPRRRPASPSRGRSPSSPPPRRYRSPPRGSPRRI-----RGSPVRRRSPLPLRRRS-- 315
Query: 475 *GSRPRSRAIPSRKEGALSRTRTS*QALPRQG-ARAPALPSREAR-PLPRQGSSAPTLPR 648
PR P R+ R+R+ + R G +R+ ++ R+ R P R+G S+
Sbjct: 316 --PPPRRLRSPPRRSPIRRRSRSP---IRRPGRSRSSSISPRKGRGPAGRRGRSSSYSSS 370
Query: 649 GETRAIPRSKLRCPVPQPYPVVKHVGVPSRCPSTGPTP 762
R IPR R P+ K S S+ P P
Sbjct: 371 PSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPP 408
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 34.7 bits (76), Expect = 0.080
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +3
Query: 171 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 302
N G G+G+DG G+ GH G GG Y GG+ G GGH
Sbjct: 67 NGGGGHGLDGYGGGHGGHYGGGGGHYG-GGGGHGGGGHYGGGGH 109
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 302
G+G G G G+G G GG Y G Y G G GGH
Sbjct: 62 GHGGHNGGGGHGLDGYGGGHGGHYGGGGGHYGGGGGHGGGGH 103
>At1g61255.1 68414.m06903 expressed protein
Length = 143
Score = 34.7 bits (76), Expect = 0.080
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +3
Query: 171 NLGYGYG-IDGLDV----GYIGHGQGLGGAYNYVDGGYSSGYGL 287
N GYG G GL G+I G G GG+Y+ + GGYS G G+
Sbjct: 48 NKGYGSGGYPGLTTEPATGFILPGSGPGGSYSELSGGYSKGRGV 91
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 34.3 bits (75), Expect = 0.11
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 403 SRQGSRAPTLRGRQ-TRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARA 579
SR+ SR+P+ RGR +++ SR R SR RSR SR + ++S ++ + +R+
Sbjct: 197 SRKDSRSPS-RGRSYSKSRSRSRGRSVSRSRSR---SRSRSRSPKAKSSRRSPAKSTSRS 252
Query: 580 PALPSREARPLPRQGSSAPTL 642
P S+ P PR+ + TL
Sbjct: 253 PGPRSKSRSPSPRRWITVETL 273
>At1g27710.1 68414.m03387 glycine-rich protein
Length = 212
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +3
Query: 159 RGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 299
+G L G GYG G G G+G G GG + GG+ G G GG
Sbjct: 99 KGELTAG-GYGGGGPGYGGGGYGPGGGGGGVVIGGGFGGGAGYGSGG 144
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 33.5 bits (73), Expect = 0.18
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +1
Query: 487 PRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLP-RQGSSAPTLPRGETRA 663
P + AIP +S + S LP RA ALP P+ R+G +AP LP T A
Sbjct: 200 PGNAAIPVEPPLTMSAEKESYAPLPPPPGRA-ALPPPPPLPMAVRKGVAAPPLPPPGTAA 258
Query: 664 IPRSKLRCPVPQPYPVVKHVGVPSRCP 744
+P P P P K V P P
Sbjct: 259 LPP-----PPPLPMAAGKGVAAPPPPP 280
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 32.7 bits (71), Expect = 0.32
Identities = 36/116 (31%), Positives = 46/116 (39%)
Frame = +1
Query: 304 PTSPRPSPSXKGVPXTLRRRQTRSIPS*EARALSRQGSRAPTLRGRQTRAISREGVR*GS 483
P R P +G R R S P+ R SR S R + R+ SR GS
Sbjct: 143 PRYSRSPPPRRGRRSRSRSRGYNSPPA--KRHQSRSVSPQDR-RYEKERSYSRSPPHNGS 199
Query: 484 RPRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRG 651
R RS + P R + R S PR+ +R P+PRQ S +PRG
Sbjct: 200 RVRSGS-PGRVKSHSRSPRRS--VSPRKNRSYTPEQARSQSPVPRQSRSPTPVPRG 252
>At2g15780.1 68415.m01809 glycine-rich protein similar to Blue
copper protein precursor (SP:Q41001) {Pisum sativum};
contains a Pfam PF02298: Plastocyanin-like domain
related to blue copper-binding protein; contains a
domain related to blue copper-binding protein
Length = 257
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +3
Query: 177 GYGYGIDGL-----DVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHT 305
G+G+G G+ G G G G+G NY G SG G +GGH+
Sbjct: 84 GWGWGWGGVPNNTHSSGSGGSGWGMGPNNNYSSGSGGSGSGWGYGGHS 131
>At5g61660.1 68418.m07736 glycine-rich protein
Length = 134
Score = 32.3 bits (70), Expect = 0.43
Identities = 22/46 (47%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +3
Query: 177 GYGYGI-DGLDVGYIGHGQGLGGA----YNYVDGGYSSGYGLNFGG 299
GYGYG G GY G+G G GGA Y Y G SG G GG
Sbjct: 74 GYGYGSGSGSGTGY-GYGSGGGGARGGGYGYGSGNGRSGGGGGGGG 118
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 31.9 bits (69), Expect = 0.56
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 177 GYGYGIDGL-DVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 299
GYG G +G G GHG G GGA + GGY+SG G GG
Sbjct: 72 GYG-GAEGYASGGGSGHGGGGGGAAS--SGGYASGAGEGGGG 110
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 302
GYG G G G G G+G GG+Y GG S G GGH
Sbjct: 242 GYGGGAAGGYGGGGGGGEGGGGSYGGEHGGGSGGGHGGGGGH 283
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = +3
Query: 162 GLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 299
G+ + GYG G G G G G+G GG Y + GY+SG G GG
Sbjct: 47 GVSSGGYG-GESGGGYGG-GSGEGAGGGYGGAE-GYASGGGSGHGG 89
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 299
G YG G G G G G GG Y GG + GYG GG
Sbjct: 220 GGAYGGGGAHGGGYGSGGGEGGGYG---GGAAGGYGGGGGG 257
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGG-YSSGYGLNFG 296
GYG G G G G G G GG Y GG ++SGYG G
Sbjct: 111 GYG-GAAGGHAGGGGGGSGGGGGSAYGAGGEHASGYGNGAG 150
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 177 GYGYGIDGLDVGYI-GHGQGLGGAYNYVDGGYSSGYGLNFGG 299
G G G GY G G+G GG Y GG++ G G GG
Sbjct: 88 GGGGGGAASSGGYASGAGEGGGGGYGGAAGGHAGGGGGGSGG 129
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 31.9 bits (69), Expect = 0.56
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +3
Query: 177 GYGYGIDGLD----VGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 299
GYG G+ +GY G G GG YN GGYS G G +GG
Sbjct: 279 GYGGGVGPYRGEPALGYSGRYGGGGGGYNR--GGYSMGGGGGYGG 321
Score = 31.1 bits (67), Expect = 0.99
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 299
G GYG G+ G+G G+GGA GGY G G + GG
Sbjct: 346 GGGYGSSGIG----GYGGGMGGAGG---GGYRGGGGYDMGG 379
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 171 NLGYGYGIDGLDVGYIGHGQGLGGAYNY---VDGGYSSGYGLNFGG 299
N G GYG DG G+ G G GG Y GG S GYG +GG
Sbjct: 227 NFGGGYG-DGYGGGHGGGYGGPGGPYKSGGGYGGGRSGGYG-GYGG 270
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 302
GYG G+ G G G+ G G V GG + GYG GG+
Sbjct: 356 GYGGGMGGAGGG--GYRGGGGYDMGGVGGGGAGGYGAGGGGN 395
>At5g66400.1 68418.m08374 dehydrin (RAB18) nearly identical to
SP|P30185 Dehydrin Rab18 {Arabidopsis thaliana}
Length = 186
Score = 31.5 bits (68), Expect = 0.75
Identities = 23/63 (36%), Positives = 28/63 (44%)
Frame = +3
Query: 132 NPXEKKLDKRGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTDV 311
NP +++ D+ G G GYG G G G G GG Y GG GYG G+
Sbjct: 18 NPIQQQYDEYGNPMGGGGYGTGGGGGATGGQGYGTGG-QGYGSGG--QGYGTGGQGYGTG 74
Query: 312 TKT 320
T T
Sbjct: 75 TGT 77
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 31.5 bits (68), Expect = 0.75
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGL-NFGG 299
G G G G D GY G G GG+Y GGY G G N GG
Sbjct: 24 GGGGGYGGGDAGYGGRGASGGGSYG-GRGGYGGGGGRGNRGG 64
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 31.5 bits (68), Expect = 0.75
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGL-NFGG 299
G G G G D GY G G GG+Y GGY G G N GG
Sbjct: 24 GGGGGYGGGDAGYGGRGASGGGSYG-GRGGYGGGGGRGNRGG 64
>At2g05530.1 68415.m00585 glycine-rich protein
Length = 115
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 183 GYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 302
G+G +G GY G G G G + GGY+ G G N GGH
Sbjct: 44 GHGGNG---GYNGGG-GYNGGGGHNGGGYNGGGGYNGGGH 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 31.1 bits (67), Expect = 0.99
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYG 284
GYG G G GY G G+ GG Y DGG G G
Sbjct: 131 GYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGGGG 166
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 299
GY G G G G+G GG GGY G G ++GG
Sbjct: 124 GYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGG 164
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 31.1 bits (67), Expect = 0.99
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +1
Query: 403 SRQGSRAPTLRGRQTRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPR--QGAR 576
SR SR+P+ ++R+ SR R S RSR++ K +++ ++L R +R
Sbjct: 201 SRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSR 260
Query: 577 APALPSREARPLPRQGSSAPTLPRGETRAIPRS 675
+P+ P ++ P PR S + + R +R+ +S
Sbjct: 261 SPS-PDKKKSP-PRAMSRSKSRSRSRSRSPSKS 291
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 30.7 bits (66), Expect = 1.3
Identities = 34/130 (26%), Positives = 44/130 (33%)
Frame = +1
Query: 310 SPRPSPSXKGVPXTLRRRQTRSIPS*EARALSRQGSRAPTLRGRQTRAISREGVR*GSRP 489
SPR S S + RRR R S R+ + R R RE R
Sbjct: 120 SPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRD 179
Query: 490 RSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRGETRAIP 669
R SR + R + + + +L + AR PR S T P E
Sbjct: 180 HRRRTRSRSASPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDK 239
Query: 670 RSKLRCPVPQ 699
RS R P P+
Sbjct: 240 RSNERSPSPR 249
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 30.7 bits (66), Expect = 1.3
Identities = 34/130 (26%), Positives = 44/130 (33%)
Frame = +1
Query: 310 SPRPSPSXKGVPXTLRRRQTRSIPS*EARALSRQGSRAPTLRGRQTRAISREGVR*GSRP 489
SPR S S + RRR R S R+ + R R RE R
Sbjct: 120 SPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRD 179
Query: 490 RSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRGETRAIP 669
R SR + R + + + +L + AR PR S T P E
Sbjct: 180 HRRRTRSRSASPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDK 239
Query: 670 RSKLRCPVPQ 699
RS R P P+
Sbjct: 240 RSNERSPSPR 249
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +1
Query: 580 PALPSREARPLPRQGSSAPTLPRGETRAIPRSKLRCPVPQPYPVVKHVGVPSRCPS-TGP 756
P+ P PLP+ SAP P + P + P P P G R PS T P
Sbjct: 67 PSPPGSLTPPLPQPSPSAPITPSPPSPTTPSNPRSPPSPNQGPPNTPSGSTPRTPSNTKP 126
Query: 757 TP 762
+P
Sbjct: 127 SP 128
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 589 PSREARPLPRQ--GSSAPTLPRGETRAIPRSKLRCPVPQPYP 708
P++ P+ R+ SS+ + P+ T P PVP PYP
Sbjct: 31 PAKHVPPVSRKMTSSSSRSKPKAPTHPPPNPSQEAPVPSPYP 72
>At1g11850.2 68414.m01364 expressed protein
Length = 108
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 162 GLLNLGYGYGID---GLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 299
GL LG G GI GL +G G G G GG GG+ G G GG
Sbjct: 58 GLGGLGIGAGIGAGAGLGLGGGGGGLGGGGGGLLGGGGFGGGAGGGLGG 106
>At5g59170.1 68418.m07416 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 288
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +2
Query: 350 PYAVDRPVP---YPVEKHVPYPVKVAVPQPYE--VVKHVPYHVKEYVKVPV 487
PY+ +P P YP P P+K P PYE VK+ P +K Y PV
Sbjct: 50 PYSPPKPPPIEKYPPPVQYPPPIKKYPPPPYEHPPVKYPP-PIKTYPHPPV 99
>At4g29240.1 68417.m04182 leucine-rich repeat family protein /
extensin family protein contains Pfam PF00560: Leucine
Rich Repeat domains; similar to leucine-rich
repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana]
Length = 415
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 162 GLLNLGYGYGIDG-LDVGYIGHGQGLGGAYNYVDGGYSSGYGLN 290
GL+ +G+ G + VG IG G G GG +V GGY++G N
Sbjct: 22 GLVQTDASFGVGGGVGVG-IGGGGGGGGGGVWVGGGYNNGGNRN 64
>At2g05440.2 68415.m00575 glycine-rich protein
Length = 154
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 299
G YG G G G G G GG Y GGY G G + GG
Sbjct: 100 GGHYGGGGGHYGGGGGGHGGGGHYGGGGGGYGGGGGHHGGG 140
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = +1
Query: 580 PALPSREARPLPRQG-SSAPTLPRGETRAIPRSKLRCPVPQPYPVVKHVGVPSRCPSTGP 756
P P +P+ G SS P P G S P P+P P PS CPS P
Sbjct: 3 PPTPDPSPKPVAPPGPSSKPVAPPGP------SPCPSPPPKPQPKPPPAPSPSPCPSPPP 56
Query: 757 TP 762
P
Sbjct: 57 KP 58
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/59 (28%), Positives = 21/59 (35%)
Frame = +1
Query: 589 PSREARPLPRQGSSAPTLPRGETRAIPRSKLRCPVPQPYPVVKHVGVPSRCPSTGPTPC 765
P P P S P P+ + P P PQP P P+ P+ P PC
Sbjct: 40 PKPPPAPSPSPCPSPPPKPQPKPVPPPACPPTPPKPQPKPAPPPEPKPAPPPAPKPVPC 98
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +1
Query: 580 PALPSREARPLPRQGS--SAPTLPRGETRAIP-RSKLRCPVPQPYPVVKHVGVPSRCPST 750
PA P +P P+ P + +P S + P P P PV H P P+
Sbjct: 66 PACPPTPPKPQPKPAPPPEPKPAPPPAPKPVPCPSPPKPPAPTPKPVPPHGPPPKPAPAP 125
Query: 751 GPTP 762
P P
Sbjct: 126 TPAP 129
>At1g11850.1 68414.m01363 expressed protein
Length = 93
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +3
Query: 168 LNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 299
L LG G G+ GL IG G G G GG+ G G GG
Sbjct: 51 LGLGGGAGLGGLG---IGAGIGAGAGLGLGGGGFGGGAGGGLGG 91
>At1g10830.1 68414.m01244 sodium symporter-related contains five
transmembrane domains; Interpro IPR001991
Sodium:dicarboxylate symporter; EST gb|F13926 comes from
this gene
Length = 367
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 517 LFDWVWRGNVDGNLNVLLHVIWHVFDDLVGLGHGYLDGIRHV 392
L WV+ G V G + +L+V+W D+ G G ++D + ++
Sbjct: 93 LVSWVYFGVVLGVVLFILNVVW--IDNSTGFGKSFIDAVSNI 132
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/71 (29%), Positives = 27/71 (38%)
Frame = +3
Query: 300 HTDVTKTITLXQRRPXYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSSNTCHIT*RSTLR 479
H+ T + + P +PS P HT S PS P P+ S H S
Sbjct: 202 HSPATPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHS--PAHAPSHSPAH 259
Query: 480 FPSTFPRHTQS 512
PS P H+ S
Sbjct: 260 APSHSPAHSPS 270
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 29.9 bits (64), Expect = 2.3
Identities = 34/114 (29%), Positives = 49/114 (42%)
Frame = +1
Query: 352 LRRRQTRSIPS*EARALSRQGSRAPTLRGRQTRAISREGVR*GSRPRSRAIPSRKEGALS 531
LRR RS R+ R SR+P R R++SR R R SR+ P R S
Sbjct: 515 LRRSSRRSPSRSPVRSSRRSLSRSPIQLSR--RSLSRSPTRLSRRSLSRS-PIRSP-RKS 570
Query: 532 RTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRGETRAIPRSKLRCPV 693
+R+ ++ + +R+P SR SS ++ R R RS R P+
Sbjct: 571 VSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKSVSRSPIRLSRRSISRSPI 624
>At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family
protein
Length = 466
Score = 29.9 bits (64), Expect = 2.3
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 523 ALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPT-LPRGETRAIPRSKLRCPVPQ 699
AL TS +ALP APA + EA ++ +P ET A + + PVP+
Sbjct: 353 ALLPQSTSNKALP-----APATVTAEAESATATTTTVDKPVPEPETVAATTTTVDKPVPE 407
Query: 700 PYPVVKHVGVPS 735
P PV + V VP+
Sbjct: 408 PEPVPEPVPVPA 419
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Frame = +1
Query: 559 PRQGARAPALPSREARPLPRQGSSAPTLPRGETRAIPRSKLRCPVP--QPYPVVKHVGVP 732
P +P P P P +PT P P + P P P P VP
Sbjct: 86 PTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVP 145
Query: 733 SRCPSTGPTP 762
S P P P
Sbjct: 146 SPTPPVSPPP 155
>At3g15400.1 68416.m01954 anther development protein, putative
similar to anther development protein ATA20 GB:AAC50042
GI:2708813 from [Arabidopsis thaliana]
Length = 416
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 174 LGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFG 296
+G GYG G VGY G G G G + +G SSG G FG
Sbjct: 207 VGRGYGSGGSGVGY-GVGIGSSGGSGFGEGIGSSG-GNGFG 245
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/51 (39%), Positives = 23/51 (45%)
Frame = +3
Query: 147 KLDKRGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 299
K D+RG + G Y G G G+ QG GG Y G Y G G GG
Sbjct: 38 KPDQRGYGDNGGNYNNGGGYQGGGGNYQGGGGNYQGGGGNYQGGGGRYQGG 88
>At4g30460.1 68417.m04325 glycine-rich protein
Length = 162
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTD 308
G G+G G G G G G G Y +GG GYG +GG D
Sbjct: 122 GGGHGGGGGGGGGRGGGGGSGNGEGYGEGG---GYGGGYGGGDD 162
>At4g29030.1 68417.m04151 glycine-rich protein glycine-rich protein
- Onobrychis viciifolia,PID:g2565429
Length = 115
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 177 GYGYGIDGL--DVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTDV 311
G G G+ G ++GY G G GG + GG SG G GG + +
Sbjct: 54 GVGGGVSGPGGNLGYGGFGGAGGGLGGGLGGGAGSGLGGGLGGGSGI 100
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/47 (46%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = +3
Query: 177 GYGYGIDGLDVG--YIGHGQG-LGGAYNYVDGGYSS---GYGLNFGG 299
GYG G G + G Y +G G LGG N GYSS YG FGG
Sbjct: 247 GYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPYGSGFGG 293
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 29.1 bits (62), Expect = 4.0
Identities = 28/106 (26%), Positives = 37/106 (34%), Gaps = 2/106 (1%)
Frame = +1
Query: 391 ARALSRQGSRAPTLRGRQTRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQG 570
+R L + G + R Q SR G R +P R + R + P
Sbjct: 471 SRPLQKAGKGRQSSRSDQR---SRHGAGRSGRSSFARLPPRSLASSRSARGAGSRAPSSS 527
Query: 571 A-RAPALPSREARP-LPRQGSSAPTLPRGETRAIPRSKLRCPVPQP 702
A RA R RP LP + P P R +P P+P P
Sbjct: 528 AKRASGSRGRRPRPPLPPPARARPLPPPARARPMPPPARARPLPPP 573
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 171 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDG--GYSSGYGLNFGG 299
N G G G G + Y G+ G GG Y G GYG NFGG
Sbjct: 158 NAGGGGGYGG-NSSYGGNAGGYGGNPPYSGNAVGGGGGYGSNFGG 201
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +3
Query: 210 GYIGHG-QGLGGAYNYVDGGY---SSGYGLNFGGH 302
G+ G G G GG Y DGGY + GYG GG+
Sbjct: 115 GFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGY 149
>At5g61090.1 68418.m07665 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
common family members: At4g18570, At3g25690, At4g04980
[Arabidopsis thaliana]
Length = 344
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 571 ARAPALPSREARPLPRQGSSAPTLPRGETRAIPRSKLRCPVPQ-PYPVVKHVGVPSRCPS 747
A +P P+R +P++ +P T PRS CP+P+ P PV + P
Sbjct: 78 AVSPVKPARATSQVPKR------VPPSRTPEAPRSVPACPIPEIPRPVPARPTPETPRPV 131
Query: 748 TG-PTP 762
T PTP
Sbjct: 132 TARPTP 137
>At5g58040.1 68418.m07263 fip1 motif-containing protein contains
Pfam profile PF05182: Fip1 motif
Length = 1192
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 195 DGLDVGYIGHGQGLGGAYNYVDGGYSS-GY 281
DG D G G G G GGA GYSS GY
Sbjct: 219 DGKDGGEAGKGSGPGGATGPPKAGYSSHGY 248
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 568 GARAPALPSREARPLPRQGSSAPTLPRGETRAIPRSKLRCPVPQP-YPVVKHVGVPSRCP 744
G+ P+ PS +P P PT P + +P + ++ P P P PV K VP+ P
Sbjct: 415 GSSTPSKPSPVHKPTP-----VPTTPVHKPTPVPTTPVQKPSPVPTTPVQKPSPVPT-TP 468
Query: 745 STGPTPCM 768
P+P +
Sbjct: 469 VHEPSPVL 476
>At4g10330.1 68417.m01698 glycine-rich protein
Length = 130
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 168 LNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFG 296
L +G G+G +G +G G G+ G + G G G+ FG
Sbjct: 35 LGVGCGFGFGAGLIGGVGFGPGVPGLQFGLGFGAGCGIGVGFG 77
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 174 LGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG 278
LG+G G G+ VG+ G+G G G AY++ Y+ G
Sbjct: 64 LGFGAGC-GIGVGF-GYGVGRGAAYDHSRSYYNVG 96
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 502 IPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSA 633
+ RKE + R + QA PRQ +AP+ PS A+P+ SS+
Sbjct: 378 VAERKEDRIKRLQQYFQAQPRQYTQAPSAPS-PAQPVLSYVSSS 420
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +3
Query: 165 LLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGG------YSSGYGLN 290
LLN GY G + VG G+G + G ++ V G YSSGYG+N
Sbjct: 211 LLN-GYAQGFNPAAVG--GYGLRMDGRFSPVGAGRSGFANYSSGYGMN 255
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +3
Query: 165 LLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGG------YSSGYGLN 290
LLN GY G + VG G+G + G ++ V G YSSGYG+N
Sbjct: 211 LLN-GYAQGFNPAAVG--GYGLRMDGRFSPVGAGRSGFANYSSGYGMN 255
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 171 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGG-YSSGY-GLNFGGH 302
+ G G G G G G G G GG Y GG Y GY G + GG+
Sbjct: 579 SFGSGRGGYGGGGGGYGGGGGYGGGGGYGGGGGYGGGYGGASSGGY 624
>At2g05440.1 68415.m00574 glycine-rich protein
Length = 127
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 171 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG---YGLNFGGH 302
N G G+G+DG G GH G GG Y G Y G YG GGH
Sbjct: 65 NGGGGHGLDGYGGGG-GHYGGGGGHYGGGGGHYGGGGGGYGGG-GGH 109
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/50 (42%), Positives = 22/50 (44%)
Frame = +2
Query: 341 SLXPYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 490
S P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 28 SSPPPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 75
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +2
Query: 350 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 490
P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 103 PPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 147
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/50 (42%), Positives = 22/50 (44%)
Frame = +2
Query: 341 SLXPYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 490
S P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 28 SSPPPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 75
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +2
Query: 350 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 490
P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 103 PPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 147
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +3
Query: 183 GYGIDGLDVGYIGHGQGLGGAYNYVDGGY--SSGYGLNFGGH 302
G G G G G G G G Y GGY S GYG GG+
Sbjct: 122 GGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGY 163
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/45 (48%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNY-VDGGY---SSGYGLNFGG 299
G GYG G GY G G GGA Y GGY + GYG N GG
Sbjct: 127 GGGYGGGG--GGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGG 169
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 299
GYG G G G G+G G GG GGY +GG
Sbjct: 142 GYGGGAGGYG-GSGGYGGGAGGYGGNSGGGYGGNAAGGYGG 181
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNY--VDGGYSSGYGLNFGGH 302
G GYG G GY G G GG+ Y GGY G +GG+
Sbjct: 134 GGGYGGSG---GYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGN 174
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +1
Query: 571 ARAPALPSREARPLPRQGSSAPTL----PRGE-TRAIPRSKLRCPVPQPYPV 711
A AP++PS+ P+P + P P G + + S PVP P PV
Sbjct: 29 AAAPSIPSKRPYPVPEERQYKPPRRPYPPHGSYSESQTSSSFSIPVPVPVPV 80
>At5g27870.1 68418.m03343 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Salix gilgiana
GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
vulgaris SP|Q43111; contains Pfam profile PF01095
pectinesterase
Length = 732
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 625 SSAPTLPRGETRAIPRSKLRCPVPQPYPVVKHVGVPSRCPSTGPTP 762
S + +LP G+ A P + P P H+G PS PS+ +P
Sbjct: 616 SPSTSLPAGQLGAPPATPSMVVSPSTSPPAGHLGSPSDTPSSLVSP 661
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 219 GHGQGLGGAYNYVDGGYSSGYGLNFGG 299
G G+G GG GGY G G ++GG
Sbjct: 74 GGGRGYGGGGRREGGGYGGGDGGSYGG 100
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 406 RQGSRAPTLRGRQTRAISREGVR*GSRP----RSRAIPSRKEGALSRTRTS*QALPRQGA 573
R+ SR+P+ R + R+ SR R SRP RSR++P + SR R+ ++ R
Sbjct: 8 RRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEV 67
Query: 574 RAP 582
P
Sbjct: 68 ENP 70
>At4g29150.1 68417.m04171 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 383
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 645 PWRNTCHTPVEVKVPXTAALPRCEARRCPVKVP 743
P+R T +P+ +VP ++P+ E C K P
Sbjct: 239 PFRRTLSSPLSGRVPPRLSMPKPEWEECSSKFP 271
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/61 (26%), Positives = 24/61 (39%)
Frame = +1
Query: 580 PALPSREARPLPRQGSSAPTLPRGETRAIPRSKLRCPVPQPYPVVKHVGVPSRCPSTGPT 759
P +P RP P G S + P+ + + S + P P P + G P + G
Sbjct: 50 PPMPGSGPRPSPPFGQSPQSFPQQQQQQPRPSPMARPGPPPPAAMARPGGPPQVSQPGGF 109
Query: 760 P 762
P
Sbjct: 110 P 110
>At1g66820.1 68414.m07595 glycine-rich protein
Length = 109
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 174 LGYGYGIDGLDVGYIGHGQGLGGAYNYVD 260
LG+G G G+ G+ G+G G+GG Y++ D
Sbjct: 76 LGFGIGC-GIGFGF-GYGFGVGGGYSFDD 102
>At1g47655.1 68414.m05294 Dof-type zinc finger domain-containing
protein
Length = 209
Score = 28.3 bits (60), Expect = 7.0
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIG 221
GYGYG++ + +GY+G
Sbjct: 148 GYGYGLEEMSIGYLG 162
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/61 (31%), Positives = 22/61 (36%)
Frame = +1
Query: 580 PALPSREARPLPRQGSSAPTLPRGETRAIPRSKLRCPVPQPYPVVKHVGVPSRCPSTGPT 759
P PS + RQ P P IP +K P P P P + PST P
Sbjct: 623 PPPPSFGSTGNKRQAQPPPPPPPPPPTRIPAAKCAPPPPPPPPTSHSGSIRVGPPSTPPP 682
Query: 760 P 762
P
Sbjct: 683 P 683
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 664 IPRSKLRCPVPQP-YPVVKHVGVPSRCPS-TGPTP 762
IP S PVPQP +PVV + +PS+ P + P P
Sbjct: 219 IPTSSPAMPVPQPLFPVVNN-SIPSQAPPFSAPLP 252
>At1g04800.1 68414.m00476 glycine-rich protein
Length = 200
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG 278
G+G GI G G+ G G G GGA VDGG+ G
Sbjct: 81 GFGGGIGG---GFGGGGFG-GGAGKGVDGGFGKG 110
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/42 (42%), Positives = 18/42 (42%)
Frame = +3
Query: 177 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 302
G GYG G GY G G G GG GG S Y GH
Sbjct: 155 GGGYGGGG---GYGGGGGGYGGGGRGGGGGGGSCYSCGESGH 193
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 406 RQGSRAPTLRGRQTRAISREGVR*GSRP----RSRAIPSRKEGALSRTRT 543
R+ SR+P+ R + R+ SR R SRP RSR++P + SR R+
Sbjct: 8 RRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRS 57
>At3g54800.1 68416.m06064 pleckstrin homology (PH) domain-containing
protein / lipid-binding START domain-containing protein
contains Pfam profiles PF00169: Pleckstring homology
(PH) domain, PF01852: Lipid-binding START domain
Length = 733
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Frame = -2
Query: 574 EHLDGVRPV-------NWYVYGI--RHLLFDWVWRGNVDGNLNVLLHVIWH 449
EHLDG + +W +G+ R LL WR DG +L H ++H
Sbjct: 249 EHLDGHTDIIHLQLYSDWLPWGMNRRDLLLRRYWRREDDGTYVILCHSVYH 299
>At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 769
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 147 KLDKRGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG 278
K+ RG+++ G +G + + HG G+ Y Y DGG+ G
Sbjct: 139 KMSGRGVMSWANGDLFNGFWLNGLRHGSGV---YKYADGGFYFG 179
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,597,906
Number of Sequences: 28952
Number of extensions: 321868
Number of successful extensions: 1481
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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