Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H13
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY241928-1|AAO85277.1|  806|Caenorhabditis elegans xylosyltransf...    29   5.9  
AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide O-xyl...    29   5.9  
AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulv...    29   5.9  

>AY241928-1|AAO85277.1|  806|Caenorhabditis elegans
           xylosyltransferase protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +1

Query: 4   LPGRNPRALCDIHCCLARILYH**VGGHIMFISDKVSSMT 123
           LP  N +A C  HC  A  LY     GH  F  + VS+ T
Sbjct: 132 LPKSNGKATCRKHCYKAGFLYFGLEFGHECFCGNDVSNAT 171


>AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide
           O-xylosyltransferase protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +1

Query: 4   LPGRNPRALCDIHCCLARILYH**VGGHIMFISDKVSSMT 123
           LP  N +A C  HC  A  LY     GH  F  + VS+ T
Sbjct: 132 LPKSNGKATCRKHCYKAGFLYFGLEFGHECFCGNDVSNAT 171


>AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulva
           protein 6 protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +1

Query: 4   LPGRNPRALCDIHCCLARILYH**VGGHIMFISDKVSSMT 123
           LP  N +A C  HC  A  LY     GH  F  + VS+ T
Sbjct: 132 LPKSNGKATCRKHCYKAGFLYFGLEFGHECFCGNDVSNAT 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,853,582
Number of Sequences: 27780
Number of extensions: 320870
Number of successful extensions: 712
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)