Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H11
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   1.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   1.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   1.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   5.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 125 QQPIWQQRVTKRQNNVKTTSKSQK 54
           Q+P W+  V K+  + K+TSK  +
Sbjct: 418 QEPAWKTHVWKKGRDKKSTSKKPR 441


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 377 FCNLNSFRNNHFKSFQTFYSTNY 309
           + N N++ NN+  ++   Y+ NY
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNY 113


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 377 FCNLNSFRNNHFKSFQTFYSTNY 309
           + N N++ NN+  ++   Y+ NY
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNY 113


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +3

Query: 267 TLKLCEEFNEEHQKIVGAVKSLEALEMVISEAV 365
           T++ C+E +   Q I+G    L+  ++ I +++
Sbjct: 250 TIRKCDESSPHDQVIIGGSNGLDTSKVHIIDSI 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,674
Number of Sequences: 438
Number of extensions: 3753
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)