Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_H08
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.064
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.26
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 27 2.4
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 3.2
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 27 3.2
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 26 7.4
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 25 9.8
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 9.8
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 9.8
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 25 9.8
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 9.8
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 9.8
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.7 bits (71), Expect = 0.064
Identities = 32/153 (20%), Positives = 58/153 (37%)
Frame = +2
Query: 236 TASLMKSRSPLWTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTKLNITNIISGF 415
T + S S L+T T + + ++ S T P ++ + +T+
Sbjct: 529 TTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTT 588
Query: 416 VLCYSFKQSCFMFPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLSTISTRTCTL 595
C + + ++S SW T P TS S+V S +++ T
Sbjct: 589 TNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTS 648
Query: 596 KTFTLSDSLYVKFSTLST*WVKYSSWTSFWTEN 694
TFT S S+ S+ +T ++S +S + N
Sbjct: 649 TTFTSSTSISTSSSSTATSSTSFASESSSFYSN 681
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 30.7 bits (66), Expect = 0.26
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = -2
Query: 389 LTSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSI 231
L ++CP T GP PG T +PT ++ Y S+++S I +ST+ +
Sbjct: 36 LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94
Query: 230 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 69
S V S + + T+ T S T SS+ S T P +S+++ +
Sbjct: 95 SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = -2
Query: 302 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 123
V EYI++ ++ S T+ I + +Y + E + + C RNTLLS+H
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199
Query: 122 SSLR 111
+SLR
Sbjct: 200 ASLR 203
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 621 KESESVKVLSVQVRVEIVDK*LFTTRLALVFNDGTVRI 508
K ++ KV +Q R +++D T + + ND +RI
Sbjct: 437 KNAKGSKVTGIQTRTQMIDNIAGDTEMLVTTNDSRIRI 474
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = -1
Query: 309 RDGESRVYPAVR-VHNGERDFINDAVN 232
++G+ ++P+V+ +H GER+ IND V+
Sbjct: 20 KNGQILLHPSVQPLHPGERELINDIVS 46
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 526 VEDECKSGRKKLLVDYFHTNLHTQNFYAFRFF 621
V +E KS K LL +T LH +Y F FF
Sbjct: 1283 VIEEVKSSHKTLL----NTELHLTKYYGFSFF 1310
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 15 PDTRT*RTSVLTTATDAPRARHV*RFR--LRKGASQARLCVH 134
PD +T T +L P RH+ RF+ ++ + RLC++
Sbjct: 125 PDAKTNWTPILPKLPCGPTQRHIYRFKEIPQQNFTHVRLCMY 166
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 643 INVVGQIFFMDFFLDGE 693
++ GQ F++DF LDG+
Sbjct: 372 VHTSGQFFYLDFLLDGK 388
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 279 VRVHNGERDFINDAVNRVTDVL 214
V NG R+++ DAV R DV+
Sbjct: 499 VESRNGRREYVQDAVRRHGDVI 520
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 625 CEVLNFINVVGQIFFMDFFLDGEFQLMAVTWSASQ--KWSPR 744
CEV F G + FF+D +L A +AS+ KW+ R
Sbjct: 225 CEVAEFAEQWGFMKVSSFFMDSIHELKAFLENASKDGKWNNR 266
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 409 WVCFVLFFQAILFYVP---RYLWKTWEGGRIKMLV 504
WV L+F+AI+ VP L+ T +GG++++ V
Sbjct: 51 WVVTDLYFKAIIHVVPGDNTILFTTDDGGKLELQV 85
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 426 ILSSNPVLCSPLLVENVGRRPHQDVGPGS 512
I S NP L S N+ RR D GP S
Sbjct: 364 IPSENPQLQSGFTTPNLSRRNSSDFGPNS 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,482,467
Number of Sequences: 5004
Number of extensions: 75014
Number of successful extensions: 263
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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