Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H07
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    31   0.22 
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    30   0.38 
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    28   2.0  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    27   4.7  
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0...    26   6.2  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   8.2  

>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 22/57 (38%), Positives = 25/57 (43%)
 Frame = -2

Query: 292 LCFWLLYITLYTPDSNGPFLSCTKKIYYFVDKRPLYTFTCIDRHNTILIIFNIYGEN 122
           LCF  LY  L     N PFLS  KK  Y  D  P     CID    + ++   Y EN
Sbjct: 450 LCFLCLYFFLIRLCLNRPFLS--KKGLYVNDMTP--RNICIDSIEDVKVLIRAYREN 502


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = -2

Query: 316 FLFICDTCLCFWLLYITLYTPDSNGPFLSCTKKIYYFVDKRPLYTFTCIDRHNTILIIF- 140
           F  +CD+   F    +TLY  +    +L     ++ F+ K+PL    C     T L+ F 
Sbjct: 120 FYCVCDS-RHFTQRLVTLYYLNYLTKYLELMDTVFLFLKKKPLAFLHCYHHGITALLCFT 178

Query: 139 NIYGENAIALFLVYLYYFIAVV-YKY 65
            + G  ++   ++ L  ++ V+ Y Y
Sbjct: 179 QLLGRTSVQWGVIGLNLYVHVIMYSY 204


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 345 FIYSWVCSDIFCLFVILAYVSGYFTSLYTHRIRMDL 238
           +I+S    DI  L+++   VSG   S+++  IRM+L
Sbjct: 11  WIFSTNAKDIAILYLLFGLVSGIIGSVFSFIIRMEL 46


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = -2

Query: 406 GIFVPHTLRDLPRERPRSHPVYILLGLFRHFLFICDT---CLCFWLLYITLYTPDSNGPF 236
           G F   T+ +L     R +    L+ + R +L+ C+     +C    YI L +  +NG  
Sbjct: 558 GQFRQLTIDELFNGEHRENGFPGLITIVRSYLYSCNPDAKTICLIERYIRLISQRANGQC 617

Query: 235 LSCTKKIYYFVDKRPLY 185
           L+    I  F+   P Y
Sbjct: 618 LTAASWIRNFITTHPSY 634


>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
           Q0080|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 48

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 360 PGLIPFIYSWVCSDIFCLFVILAYVSGYF 274
           P L+PF +  + S  F +F +L Y+S  +
Sbjct: 2   PQLVPFYFINILSFGFLIFTVLLYISSVY 30


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 211 YFVDKRPLYTFTCIDR 164
           Y VDK P + FTCID+
Sbjct: 28  YAVDKYPDFHFTCIDK 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,286
Number of Sequences: 5004
Number of extensions: 56338
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)