Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H07
         (881 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36073| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-27)                 31   1.6  
SB_36071| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-27)                 31   1.6  
SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.6  
SB_41245| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_32| Best HMM Match : Amelogenin (HMM E-Value=4.2)                   28   8.7  

>SB_36073| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-27)
          Length = 305

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 151 LIIFNIYGENAIALFLVYLYYFIAVVYKY 65
           L++  IY   A+ALFLV+   FI  VY Y
Sbjct: 135 LLVHKIYVSCAVALFLVFPLVFILFVYSY 163


>SB_36071| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-27)
          Length = 310

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 151 LIIFNIYGENAIALFLVYLYYFIAVVYKY 65
           L++  IY   A+ALFLV+   FI  VY Y
Sbjct: 141 LLVHKIYVSCAVALFLVFPLVFILFVYSY 169


>SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 372 RVRGPGLIPFIYSWVCSDIFCLFVILAYVSGYFTSLYTHRIRMDLFC 232
           R RG  +   I+ W   D++ +  +L Y   YF  +  HR+ M  FC
Sbjct: 376 RRRGRDIRKVIFVWSVRDLYMVTSVLDYDKEYFAKVSDHRLPMS-FC 421


>SB_41245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 334 LGLFRHFLFICDTCLCFWLLYITL 263
           +G    F++ C TCLC W+ Y+ L
Sbjct: 88  MGAVPVFVYGCSTCLCLWVQYMCL 111



 Score = 29.9 bits (64), Expect = 2.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 340 ILLGLFRHFLFICDTCLCFWLLYITL 263
           + +G    F++ C TC+C W+ Y+ L
Sbjct: 136 LTMGAVPVFVYGCSTCICLWVQYLCL 161



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 334 LGLFRHFLFICDTCLCFWLLYITL 263
           +G    F++ C TC+C W+ Y+ L
Sbjct: 113 MGAVPVFVYGCSTCVCLWVQYLCL 136



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 343 YILLGLFRHFLFICDTCLCFWLLYITL 263
           Y+ +G    F + C TC+C W+ Y +L
Sbjct: 60  YLSMGAVPVFDYGCSTCVCLWVQYRSL 86


>SB_32| Best HMM Match : Amelogenin (HMM E-Value=4.2)
          Length = 537

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +2

Query: 230 RQKRSIRIRCV*SDVK*PET*ASITNKQKMSEQTQEYINGMRPGPLTREIP 382
           +Q+R +R+     +++ PET  ++T  Q +S+  + +  G+R   LT   P
Sbjct: 342 KQRRRVRVEAK-HEIQKPETPGAVTKHQGISDIDEHFRQGLRMRQLTELSP 391


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,016,920
Number of Sequences: 59808
Number of extensions: 418841
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)