Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H07
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    30   0.032
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   8.6  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   8.6  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 29.9 bits (64), Expect = 0.032
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = -2

Query: 241 PFLSCTKKIYYFVDKRPLYTFTCIDRHNTILIIFNIYGENAIALFLVYLYYFIAVVYKYN 62
           PF       +YF D +PL+   C D     +I+    G  ++  FL+ +  +I ++    
Sbjct: 27  PFCGPNVIDHYFRDLQPLFKLACTDTFMEGVIVLAFSGLFSVFSFLILVSSYIVILVNLR 86

Query: 61  N 59
           N
Sbjct: 87  N 87


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 681 RSRSIYPPTPFTSF 640
           R R I PPTPF  F
Sbjct: 147 RFRCIGPPTPFPRF 160


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 681 RSRSIYPPTPFTSF 640
           R R I PPTPF  F
Sbjct: 372 RFRHIGPPTPFPRF 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,947
Number of Sequences: 438
Number of extensions: 4321
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)